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| Status |
Public on Sep 30, 2019 |
| Title |
Sirena1: The most abundant lncRNA in mouse oocytes brings together post-transcriptional regulations and mitochondrial distribution (rat wild-type GV oocytes) |
| Organism |
Rattus norvegicus |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Long non-coding RNAs (lncRNAs) are a large group of rapidly evolving non-coding RNAs. Tens of thousands of lncRNAs were identified but function has been assigned to relatively few. LncRNAs expressed in mouse oocytes have been annotated but their contribution to oocyte development and early development remains unknown. Here, we report evolutionary history and functional analysis of Sirena1, maternal lncRNA that is the most expressed maternal lncRNA and 10th most abundant Pol II transcript in mouse oocytes.
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| |
|
| Overall design |
Bulk RNA-seq of rat GV oocyte - 4 replicates
|
| |
|
| Contributor(s) |
Svoboda P, Malik R, Ganesh S, Horvat F |
| Citation(s) |
36482406 |
| Submission date |
Sep 17, 2019 |
| Last update date |
Jan 04, 2023 |
| Contact name |
Filip Horvat |
| E-mail(s) |
filip.horvat@img.cas.cz
|
| Organization name |
Institute of Molecular Genetics of the ASCR
|
| Lab |
Laboratory of Epigenetic Regulations
|
| Street address |
Videnska 1083
|
| City |
Prague |
| ZIP/Postal code |
14220 |
| Country |
Czech Republic |
| |
|
| Platforms (1) |
| GPL14844 |
Illumina HiSeq 2000 (Rattus norvegicus) |
|
| Samples (4)
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| This SubSeries is part of SuperSeries: |
| GSE137563 |
Sirena1: The most abundant lncRNA in mouse oocytes brings together post-transcriptional regulations and mitochondrial distribution |
|
| Relations |
| BioProject |
PRJNA565932 |
| SRA |
SRP222000 |
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