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Series GSE137975 Query DataSets for GSE137975
Status Public on Sep 01, 2021
Title Human embryonic stem cell-derived neural crest model for neuroblastoma
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Neuroblastoma is a common childhood malignant tumor of neural crest origin with remarkable heterogeneity in outcomes. Amplification of the oncogene MYCN is strongly associated with highly malignant behaviour and poor prognosis. Here, we used human ESC-derived neural crest model to recapitulate the initiation of MYCN-driven neuroblastoma and to identify MYCN downstream effectors. Our results show that induced deregulation of MYCN in human neural crest progenitor cells is sufficient to induce tumors that recapitulate the pathological and molecular features of human MYCN-amplified neuroblastoma(MNA-NB). By using this platform, we are able to identify a group of 28 genes that are associated with MYCN expression level only in MNA-NB.
 
Overall design RNA-sequencing of control NCSCs and NCSCs+MYCN
 
Contributor(s) Weng Z
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Submission date Sep 25, 2019
Last update date Sep 02, 2021
Contact name Zhihui WENG
E-mail(s) zhihui.weng@gmail.com
Organization name CUHK
Street address Lo Kwee-Seong Integrated Biomedical Sciences Building, Area 39, The Chinese University of Hong Kong
City HONG KONG
ZIP/Postal code 000000
Country Hong Kong
 
Platforms (1)
GPL23227 BGISEQ-500 (Homo sapiens)
Samples (16)
GSM4095910 control NCSC replication 1
GSM4095911 control NCSC replication 2
GSM4095912 control NCSC replication 3
Relations
BioProject PRJNA574066
SRA SRP223240

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE137975_RAW.tar 5.4 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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