 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Oct 07, 2019 |
| Title |
Nivolumab treatment for relapsed/refractory Epstein-Barr virus-associated hemophagocytic lymphohistocytosis in adults |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Single cell RNA sequencing (scRNA-seq) was performed with peripheral blood cells before (Day 0, T0), during nivolumab treatment (Day 7, T1; Day 21, T2), and when plasma EBV turned negative (Day 76, T3) in 1 patient (patient 7). scRNA-seq libraries were generated following the recommended protocol of the 3’ scRNA-seq 10X genomics platform and using v2 chemistry, and sequenced data was collected by illumina NovaSeq 6000 sequencing.
|
| |
|
| Overall design |
Single cell RNA sequencing (scRNA-seq) in 4 stages
|
| |
|
| Contributor(s) |
Liu P, Pan X, Chen C, Niu T, Shuai X, Wang J, Chen X |
| Citation(s) |
31914172 |
| Submission date |
Oct 07, 2019 |
| Last update date |
Apr 02, 2020 |
| Contact name |
Xaingyu Pan |
| E-mail(s) |
pangxueyu233@outlook.com
|
| Organization name |
Sichuan University
|
| Department |
State Key Laboratory of Biotherapy, West China Hospital, Sihcuan University.
|
| Lab |
Chen & Liu Lab
|
| Street address |
No.17 Renming road section3
|
| City |
Chengdu, Cihna |
| State/province |
Sichuan |
| ZIP/Postal code |
610041 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (4)
|
|
| Relations |
| BioProject |
PRJNA576213 |
| SRA |
SRP224614 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE138504_RAW.tar |
1.0 Gb |
(http)(custom) |
TAR (of RDS, TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
Less...
More...