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| Status |
Public on Feb 06, 2020 |
| Title |
Transcriptomic and epigenetic profiling of genome control in the germline stem cell cycle in mice [ChIP-seq II] |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
The faithful transmission of genome information is fundamental to the germline stem cell cycle. One exception to this is meiosis when active recombination takes place. This study aims to understand how dna damage responses and meiotic recombination mechanisms are properly coordinated with developmental programs of germ cells by comparing transcriptomic and epigenetic profiles of germline competent pluripotent stem cells, germline stem cells and somatic cells etc. in mice.
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| Overall design |
Control IgG ChIP and genome DNA (from whole cell extract) samples of mouse germline stem (GS) cells were analyzed by Illumina deep sequencing.
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| Contributor(s) |
Chuma S, Hosokawa M |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Oct 31, 2019 |
| Last update date |
Feb 08, 2020 |
| Contact name |
Shinichiro Chuma |
| E-mail(s) |
chuma.shinichiro.3x@kyoto-u.ac.jp
|
| Phone |
+81-75-751-3821
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| Organization name |
Kyoto university
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| Department |
Institute for Frontier Life and Medical Sciences
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| Lab |
Laboratory of Developmental Epigenome
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| Street address |
53 Kawahara-cho, Shogoin, Sakyo-ku
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| City |
Kyoto |
| State/province |
Kyoto |
| ZIP/Postal code |
606-8507 |
| Country |
Japan |
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| Platforms (1) |
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| Samples (4)
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| This SubSeries is part of SuperSeries: |
| GSE116798 |
Transcriptomic and epigenetic profiling of genome control in the germline stem cell cycle in mice |
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| Relations |
| BioProject |
PRJNA586866 |
| SRA |
SRP227835 |
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