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Series GSE140085 Query DataSets for GSE140085
Status Public on Jun 29, 2020
Title Loss of TET2 results in gene expression represssion in mouse naïve B-cells and lymphoma cells [DNA-Seq]
Organism Mus musculus
Experiment type Other
Summary Absence of Tet2 at mouse cells does not result in decreased somatic hypermutation
 
Overall design PCR amplification and HTS sequencing of JH4 (mm10:chr12:113,427,959-113,428,543) and Su (mm10:chr12:113,425,655-113,426,278) in TET2 WT and TET2 KO mouse GC B-cells.
 
Contributor(s) Melnick A, Li S, Dominguez MD, Chen X, Rosikiewicz W
Citation(s) 32596441
Submission date Nov 07, 2019
Last update date Jun 29, 2020
Contact name Sheng Li
Organization name The Jackson Laboratory
Lab Li Lab
Street address 10 Discovery Drive
City Farmington
State/province CT
ZIP/Postal code 06032
Country USA
 
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (5)
GSM4154188 Sample_1.WT1_GCB
GSM4154189 Sample_2.WT2_GCB
GSM4154190 Sample_3.WT3_GCB
This SubSeries is part of SuperSeries:
GSE140086 Loss of TET2 results in gene expression represssion in mouse naïve B-cells and lymphoma cells
Relations
BioProject PRJNA588230
SRA SRP229089

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE140085_RAW.tar 90.0 Kb (http)(custom) TAR (of VCF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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