GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE140105
Query DataSets for GSE140105
Status
Public on Nov 08, 2019
Title
AlkB-facilitated RNA methylation sequencing (ARM-seq) and Demethylase-thermostable group II intron RT tRNA sequencing (DM-tRNA-seq)
Organism
Mus musculus
Experiment type
Non-coding RNA profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
Has this study been published? Please
login
to update or
notify GEO
.
Submission date
Nov 07, 2019
Last update date
Nov 10, 2019
Contact name
Todd Lowe
E-mail(s)
aimannin@ucsc.edu
Organization name
University of California Santa Cruz
Department
Biomolecular Engineering and Bioinformatics
Lab
Lowe Lab
Street address
1156 High Street
City
Santa Cruz
State/province
CA
ZIP/Postal code
95064
Country
USA
Platforms (2)
GPL16417
Illumina MiSeq (Mus musculus)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (76)
Less...
More...
GSM4154300
Mouse Thymus M4 -AlkB ARM-seq
GSM4154301
Mouse Thymus M5 -AlkB ARM-seq
GSM4154302
Mouse Thymus M6 -AlkB ARM-seq
GSM4154303
Mouse Thymus M4 +AlkB ARM-seq
GSM4154304
Mouse Thymus M5 +AlkB ARM-seq
GSM4154305
Mouse Thymus M6 +AlkB ARM-seq
GSM4154306
Mouse Spleen M4 -AlkB ARM-seq
GSM4154307
Mouse Spleen M5 -AlkB ARM-seq
GSM4154308
Mouse Spleen M6 -AlkB ARM-seq
GSM4154309
Mouse Spleen M4 +AlkB ARM-seq
GSM4154310
Mouse Spleen M5 +AlkB ARM-seq
GSM4154311
Mouse Spleen M6 +AlkB ARM-seq
GSM4154312
Mouse Spleen M4 -AlkB DM-tRNA-seq
GSM4154313
Mouse Spleen M5 -AlkB DM-tRNA-seq
GSM4154314
Mouse Spleen M6 -AlkB DM-tRNA-seq
GSM4154315
Mouse Spleen M4 +AlkB DM-tRNA-seq
GSM4154316
Mouse Spleen M5 +AlkB DM-tRNA-seq
GSM4154317
Mouse Spleen M6 +AlkB DM-tRNA-seq
GSM4154318
Mouse Liver M4 -AlkB ARM-seq
GSM4154319
Mouse Liver M5 -AlkB ARM-seq
GSM4154320
Mouse Liver M4 +AlkB ARM-seq
GSM4154321
Mouse Liver M5 +AlkB ARM-seq
GSM4154322
Mouse Liver M4 -AlkB DM-tRNA-seq
GSM4154323
Mouse Liver M5 -AlkB DM-tRNA-seq
GSM4154324
Mouse Liver M6 -AlkB DM-tRNA-seq
GSM4154325
Mouse Liver M4 +AlkB DM-tRNA-seq
GSM4154326
Mouse Liver M5 +AlkB DM-tRNA-seq
GSM4154327
Mouse Liver M6 +AlkB DM-tRNA-seq
GSM4154328
Mouse Kidney M4 -AlkB ARM-seq
GSM4154329
Mouse Kidney M5 -AlkB ARM-seq
GSM4154330
Mouse Kidney M6 -AlkB ARM-seq
GSM4154331
Mouse Kidney M4 +AlkB ARM-seq
GSM4154332
Mouse Kidney M5 +AlkB ARM-seq
GSM4154333
Mouse Kidney M6 +AlkB ARM-seq
GSM4154334
Mouse Heart M4 -AlkB DM-tRNA-seq
GSM4154335
Mouse Heart M5 -AlkB DM-tRNA-seq
GSM4154336
Mouse Heart M6 -AlkB DM-tRNA-seq
GSM4154337
Mouse Heart M4 +AlkB DM-tRNA-seq
GSM4154338
Mouse Heart M5 +AlkB DM-tRNA-seq
GSM4154339
Mouse Heart M6 +AlkB DM-tRNA-seq
GSM4154340
Mouse Brain M4 -AlkB ARM-seq
GSM4154341
Mouse Brain M5 -AlkB ARM-seq
GSM4154342
Mouse Brain M6 -AlkB ARM-seq
GSM4154343
Mouse Brain M4 +AlkB ARM-seq
GSM4154344
Mouse Brain M5 +AlkB ARM-seq
GSM4154345
Mouse Brain M6 +AlkB ARM-seq
GSM4154346
Mouse Brain M4 -AlkB DM-tRNA-seq
GSM4154347
Mouse Brain M5 -AlkB DM-tRNA-seq
GSM4154348
Mouse Brain M6 -AlkB DM-tRNA-seq
GSM4154349
Mouse Brain M4 +AlkB DM-tRNA-seq
GSM4154350
Mouse Brain M5 +AlkB DM-tRNA-seq
GSM4154351
Mouse Brain M6 +AlkB DM-tRNA-seq
GSM4154352
Mouse Proximal Colon M4 -AlkB ARM-seq
GSM4154353
Mouse Proximal Colon M5 -AlkB ARM-seq
GSM4154354
Mouse Proximal Colon M6 -AlkB ARM-seq
GSM4154355
Mouse Proximal Colon M4 +AlkB ARM-seq
GSM4154356
Mouse Proximal Colon M5 +AlkB ARM-seq
GSM4154357
Mouse Proximal Colon M6 +AlkB ARM-seq
GSM4154358
Mouse Proximal Colon M4 -AlkB DM-tRNA-seq
GSM4154359
Mouse Proximal Colon M5 -AlkB DM-tRNA-seq
GSM4154360
Mouse Proximal Colon M6 -AlkB DM-tRNA-seq
GSM4154361
Mouse Proximal Colon M4 +AlkB DM-tRNA-seq
GSM4154362
Mouse Proximal Colon M5 +AlkB DM-tRNA-seq
GSM4154363
Mouse Proximal Colon M6 +AlkB DM-tRNA-seq
GSM4154436
Mouse Distal Colon M4 -AlkB ARM-seq
GSM4154437
Mouse Distal Colon M5 -AlkB ARM-seq
GSM4154438
Mouse Distal Colon M6 -AlkB ARM-seq
GSM4154439
Mouse Distal Colon M4 +AlkB ARM-seq
GSM4154440
Mouse Distal Colon M5 +AlkB ARM-seq
GSM4154441
Mouse Distal Colon M6 +AlkB ARM-seq
GSM4154442
Mouse Distal Colon M4 -AlkB DM-tRNA-seq
GSM4154443
Mouse Distal Colon M5 -AlkB DM-tRNA-seq
GSM4154444
Mouse Distal Colon M6 -AlkB DM-tRNA-seq
GSM4154445
Mouse Distal Colon M4 +AlkB DM-tRNA-seq
GSM4154446
Mouse Distal Colon M5 +AlkB DM-tRNA-seq
GSM4154447
Mouse Distal Colon M6 +AlkB DM-tRNA-seq
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE140094
AlkB-facilitated RNA methylation sequencing (ARM-seq) and Demethylase-thermostable group II intron RT tRNA sequencing (DM-tRNA-seq) [Thymus]
GSE140095
AlkB-facilitated RNA methylation sequencing (ARM-seq) and Demethylase-thermostable group II intron RT tRNA sequencing (DM-tRNA-seq) [spleen]
GSE140096
AlkB-facilitated RNA methylation sequencing (ARM-seq) and Demethylase-thermostable group II intron RT tRNA sequencing (DM-tRNA-seq) [liver]
GSE140097
AlkB-facilitated RNA methylation sequencing (ARM-seq) and Demethylase-thermostable group II intron RT tRNA sequencing (DM-tRNA-seq) [kidney]
GSE140098
AlkB-facilitated RNA methylation sequencing (ARM-seq) and Demethylase-thermostable group II intron RT tRNA sequencing (DM-tRNA-seq) [heart]
GSE140099
AlkB-facilitated RNA methylation sequencing (ARM-seq) and Demethylase-thermostable group II intron RT tRNA sequencing (DM-tRNA-seq) [brain]
GSE140100
AlkB-facilitated RNA methylation sequencing (ARM-seq) and Demethylase-thermostable group II intron RT tRNA sequencing (DM-tRNA-seq) [Proximal Colon]
GSE140103
AlkB-facilitated RNA methylation sequencing (ARM-seq) and Demethylase-thermostable group II intron RT tRNA sequencing (DM-tRNA-seq) [Distal Colon]
Relations
BioProject
PRJNA588262
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE140105_RAW.tar
262.5 Mb
(http)
(custom)
TAR (of BW)
SRA Run Selector
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
Less...
More...