|
| Status |
Public on Dec 10, 2019 |
| Title |
Rapid and Inexpensive Preparation of Genome-Wide Nucleosome Footprints from Model and Non-Model Organisms |
| Organisms |
Schizosaccharomyces pombe; Saccharomyces cerevisiae; Neurospora crassa |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We report the development of a versatile strategy to map nucleosomes in multiple model organisms
|
| |
|
| Overall design |
Nucleosome positoining data (MNase-seq) from S. cerevisiae (exponentially-growing, quiescent, solid patches), N. crassa, and S. pombe
|
| |
|
| Contributor(s) |
McKnight J |
| Citation(s) |
34041500, 37461563 |
| Submission date |
Dec 09, 2019 |
| Last update date |
Sep 12, 2023 |
| Contact name |
Jeffrey N McKnight |
| E-mail(s) |
jmcknig2@uoregon.edu
|
| Organization name |
University of Oregon
|
| Department |
Institute of Molecular Biology
|
| Lab |
McKnight Lab
|
| Street address |
1229 University of Oregon, 1318 Franklin Blvd, Rm 273 Onyx Bridge
|
| City |
Eugene |
| State/province |
OR |
| ZIP/Postal code |
97408 |
| Country |
USA |
| |
|
| Platforms (3) |
| GPL19756 |
Illumina NextSeq 500 (Saccharomyces cerevisiae) |
| GPL20584 |
Illumina NextSeq 500 (Schizosaccharomyces pombe) |
| GPL20660 |
Illumina NextSeq 500 (Neurospora crassa) |
|
| Samples (13)
|
|
| Relations |
| BioProject |
PRJNA594357 |
| SRA |
SRP235270 |
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