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Series GSE145104 Query DataSets for GSE145104
Status Public on Dec 18, 2020
Title RNAseq of mRNA from splenic and hepatic CD8 T cells in ND and CD-HFD mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary In this study we want to compare the gene expression profile of CD44+CXCR6+ CD8+ T cells from the liver of ND and CD-HFD mice with hepatic CD44+CXCR6neg and splenic CD44+ CX3CR1neg CD8 T cells of ND and CD-HFD mice. This comparison will reveal transcriptional signatures of hepatic CD44+CXCR6+ CD8+ T cells in CD-HFD responsible for causing liver pathology in NASH.
 
Overall design splenic and hepatic CD8 T cell populations in different diets (ND and CD-HFD)
 
Contributor(s) Dudek M, Donakonda S, Oellinger R, Engleitner T, Knolle P
Citation(s) 33762736
Submission date Feb 11, 2020
Last update date Sep 26, 2022
Contact name sainitin donakonda
E-mail(s) saigro16@gmail.com
Organization name TUM
Department Institute of Immunology and Experimental Oncology
Lab Immunology
Street address Ismaningerstr. 22
City München
State/province Select
ZIP/Postal code 81675
Country Germany
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (35)
GSM4306583 liver_CDHFD_CXCR6neg_Replicate1
GSM4306584 liver_CDHFD_CXCR6neg_Replicate2
GSM4306585 liver_CDHFD_CXCR6neg_Replicate3
Relations
BioProject PRJNA606041
SRA SRP248222

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE145104_CountTable.txt.gz 508.4 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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