NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE145413 Query DataSets for GSE145413
Status Public on Sep 22, 2021
Title The RNA-binding protein HuR is required for antigen-specific germinal centre B cell selection.
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The germinal centre (GC) is a hallmark of adaptive immunity. Gene expression in GCs is tightly regulated but the impact of post-transcriptional mechanisms are largely unknown. Here we show that expression of the RNA binding protein HuR is essential in GCs. In its absence, GC B cells are at a competitive disadvantage and high-affinity antibody production is severely impaired. Mechanistically, HuR affects the transcriptome qualitatively and quantitatively to enable the expression of a Myc- dependent transcriptional program essential for light zone B cells to re-enter into the dark zone for further proliferation and Ig somatic hypermutation. HuR controls the splicing and abundance of mRNAs required for entry into and transition through the S phase of the cell cycle. HuR modulates a gene signature associated with DNA deamination preserving GC B cells from extensive DNA damage and cell death.
 
Overall design Germinal centre B cells from the dark zone (DZ, CD19+ IgD- CD38- CD95+ CXCR4+ CD86- cells) and the light zone (LZ, CD19+ IgD- CD38- CD95+ CXCR4- CD86+ cells) were sorted (by FACs) from HuRfl/fl (control) or HuRfl/fl AIDCre (HuR KO) mice at day 7 after immunization with NP-KLH in alum.
 
Contributor(s) Diaz-Muñoz MD, Osma-Garcia IC, Capitan-Sobrino D, Mouysset M, Bell SE, Lebeurrier M, Turner M
Citation(s) 34772950
Submission date Feb 17, 2020
Last update date Nov 30, 2021
Contact name Manuel D Diaz-Munoz
E-mail(s) manuel.diaz-munoz@inserm.fr
Organization name INSERM
Department UMR1291
Lab Toulouse Institute for Infectious and Inflammatory Diseases (Infinity)
Street address CHU Purpan, BP3028
City Toulouse
ZIP/Postal code 31024
Country France
 
Platforms (2)
GPL15103 Illumina HiSeq 1000 (Mus musculus)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (12)
GSM4317888 WT_DZ_MDM_9 [DZ_WT1]
GSM4317889 WT_LZ_MDM_10 [LZ_WT1]
GSM4317890 HuRKO_DZ_MDM_11 [DZ_KO1]
Relations
BioProject PRJNA607119
SRA SRP249754

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE145413_DESeq2_KO_DZ_WT_DZ.csv.gz 891.7 Kb (ftp)(http) CSV
GSE145413_DESeq2_KO_LZ_WT_LZ.csv.gz 891.8 Kb (ftp)(http) CSV
GSE145413_DESeq2_Normalised_counts.csv.gz 2.3 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap