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Series GSE145922 Query DataSets for GSE145922
Status Public on May 14, 2020
Title IL-23 promotes a coordinated B-cell germinal center program for class-switch recombination to IgG2b in BXD2 mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Summary IL-23 promotes autoimmune disease including Th17 CD4 T-cell development and autoantibody (autoAb) production. Here, we show that a deficiency of the p19 component of IL-23 in autoimmune BXD2 (BXD2-p19−/−) mice leads to an imbalance of the follicular T-helper cell program with a shift from Tfh-IL-17 to Tfh-IFN-ɣ. Although the germinal center (GC) size and number of GC B cells remained the same, BXD2-p19−/− mice exhibited a lower class-switch recombination (CSR) program in the GC B cells, leading to a lower serum levels of IgG2b. Single cell transcriptomics analysis revealed that while GC B cell expression of Ifngr1 and Il21r genes exhibited a synchronized expression pattern with plasma cell program genes, Il17ra exhibited a synchronized expression pattern with pre-plasmablast GC program genes. Down-regulation of Ighg2b in BXD2-p19−/− GC B cells was associated with decreased expression of CSR-related base excision repair genes that were otherwise predominantly expressed by Il17ra+ cells compared to Ifngr1+ GC B cells in BXD2 mice. Together, these results suggest that although IL-23 is dispensable for GC formation, it is essential for development of the Tfh-IL17 Tfh subpopulation, which drives CSR-related base excision repair genes during the pre-plasmablast GC stage of development.
 
Overall design We carried out single cell RNAseq and single-cell V(D)J seq for GC B cells derived from the spleens of BXD2 mice and IL-23-deficient BXD2 (BXD2-p19-/-)mice
 
Contributor(s) Hong H, Gao M, Liu S, Hsu H, Mountz JD
Citation(s) 32554431
Submission date Feb 25, 2020
Last update date Jun 09, 2021
Contact name Min Gao
E-mail(s) mgao@uabmc.edu
Organization name University of Alabama at Birmingham
Street address 1900 University Blvd, THT Building Suite #130G
City Birmingham
State/province AL
ZIP/Postal code 35294
Country USA
 
Platforms (2)
GPL16417 Illumina MiSeq (Mus musculus)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (10)
GSM4339439 BXD2-p19-/-_#1_single_cell_RNAseq
GSM4339440 BXD2-p19-/-_#2_single_cell_RNAseq
GSM4339441 BXD2-p19-/-_#3_single_cell_RNAseq
Relations
BioProject PRJNA608738
SRA SRP250728

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE145922_RAW.tar 75.4 Mb (http)(custom) TAR (of CSV, MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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