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Series GSE146141 Query DataSets for GSE146141
Status Public on Apr 13, 2020
Title The Loss of TBK1 Kinase Activity in Motor Neurons or in All Cell Types Differentially Impacts ALS Disease Progression in SOD1 Mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary DNA sequence variants in the TBK1 gene associate with or cause sporadic or familial amyotrophic lateral sclerosis (ALS). Here we show that mice bearing human ALS-associated TBK1 missense loss-of-function mutations, or mice in which the Tbk1 gene is selectively deleted in motor neurons, do not display
a neurodegenerative disease phenotype. However, loss of TBK1 function in motor neurons of the SOD1G93A mouse model of ALS impairs autophagy, increases SOD1 aggregation, and accelerates early disease onset without affecting lifespan. By contrast, point mutations that decrease TBK1 kinase activity in all cells also accelerate disease onset but extend the lifespan of SOD1 mice. This difference correlates with the failure to activate high levels of expression of interferon-inducible genes in glia. We conclude that loss of TBK1 kinase activity impacts ALS disease progression through distinct pathways in different spinal cord cell types and further implicate the importance of glia in neurodegeneration.
 
Overall design Dissection of pathways affected by TBK1 loss of function mutations in the ALS spinal cord
 
Contributor(s) Gerbino V, Maniatis T
Citation(s) 32220666
Submission date Mar 01, 2020
Last update date Apr 15, 2020
Contact name Valeria Gerbino
E-mail(s) vg2362@columbia.edu
Organization name Columbia University
Department Zuckerman Mind Brain Behavior Institute
Lab Maniatis Lab
Street address 3227 Broadway
City New york
State/province Ny
ZIP/Postal code 10027
Country USA
 
Platforms (1)
GPL21626 NextSeq 550 (Mus musculus)
Samples (12)
GSM4367164 TC637
GSM4367165 TC651
GSM4367166 TC643
Relations
BioProject PRJNA609549
SRA SRP251172

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Supplementary file Size Download File type/resource
GSE146141_RAW.tar 1.9 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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