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| Status |
Public on Mar 25, 2021 |
| Title |
Next Generation Sequencing Analysis of Wild Type and SESAME Transcriptomes I |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The purpose is to analyze the effect of SESAME complex on gene transcription
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| Overall design |
The mRNA profiles of wild type (WT), acs2-ts, sam1, ser33, shm2, pyk1, were generated by deep sequencing, in duplicate. Technical replicates were made by producing another library from the same RNA extraction.
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| Contributor(s) |
Li S, Gogol M |
| Citation(s) |
33500413 |
| Submission date |
Mar 30, 2020 |
| Last update date |
Mar 25, 2021 |
| Contact name |
Madelaine Gogol |
| Organization name |
Stowers Institute
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| Department |
Computational Biology Core
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| Street address |
1000 E. 50th Street
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| City |
Kansas City |
| State/province |
MO |
| ZIP/Postal code |
64110 |
| Country |
USA |
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| Platforms (1) |
| GPL13821 |
Illumina HiSeq 2000 (Saccharomyces cerevisiae) |
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| Samples (28)
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| GSM4445567 |
wt rep 2, technical rep 2 |
| GSM4445568 |
acs2 rep 1 |
| GSM4445569 |
acs2 rep 1, technical rep 2 |
| GSM4445570 |
acs2 rep 3 |
| GSM4445571 |
acs2 rep 3, technical rep 2 |
| GSM4445572 |
by4741 rep 2 |
| GSM4445573 |
by4741 rep 2, technical rep 2 |
| GSM4445574 |
by4741 rep 3 |
| GSM4445575 |
by4741 rep 3, technical rep 2 |
| GSM4445576 |
sam1 rep 1 |
| GSM4445577 |
sam1 rep 1, technical rep 2 |
| GSM4445578 |
sam1 rep 3 |
| GSM4445579 |
sam1 rep 3, technical rep 2 |
| GSM4445580 |
ser33 rep 2 |
| GSM4445581 |
ser33 rep 2, technical rep 2 |
| GSM4445582 |
ser33 rep 3 |
| GSM4445583 |
ser33 rep 3, technical rep 2 |
| GSM4445584 |
shm2 rep 1 |
| GSM4445585 |
shm2 rep 1, technical rep 2 |
| GSM4445586 |
shm2 rep 2 |
| GSM4445587 |
shm2 rep 2, technical rep 2 |
| GSM4445588 |
wt pyk1 rep 1 |
| GSM4445589 |
wt pyk1 rep 3 |
| GSM4445590 |
pyk1 rep 1 |
| GSM4445591 |
pyk1 rep 2 |
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| This SubSeries is part of SuperSeries: |
| GSE147765 |
Genome-wide profiling of SESAME complex and related regulators |
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| Relations |
| BioProject |
PRJNA616331 |
| SRA |
SRP254647 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE147763_summary_genes_group1.txt.gz |
592.5 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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