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Series GSE149877 Query DataSets for GSE149877
Status Public on May 11, 2020
Title Epigenetic landscape of four exhausted CD8 T cell subsets
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Open chromatin accessibility analysis of four defiined CD8 Tcell subsets to understand the mechanism of exhaustion hierarchy
 
Overall design 2-3 Biological replicates were analyzed for each of the four defined Tcell subsets of CD8 exhaustion
Web link https://doi.org/10.1016/j.immuni.2020.04.014
 
Contributor(s) Beltra J, Wherry EJ
Citation(s) 32396847
Submission date May 05, 2020
Last update date Aug 10, 2020
Contact name E JOHN WHERRY
Organization name University of Pennsylvania
Department Systems Pharmacology and Translational Therapeutics,Institute for Immunology
Street address 421 Curie Blvd,354 BRB II/III
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL21626 NextSeq 550 (Mus musculus)
Samples (11)
GSM4516268 ATAC-Seq TexProg1_rep1
GSM4516269 ATAC-Seq TexProg1_rep2
GSM4516270 ATAC-Seq TexProg2_rep1
This SubSeries is part of SuperSeries:
GSE149879 Landscape of four exhausted CD8 T cell subsets
Relations
BioProject PRJNA630423
SRA SRP260066

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE149877_RAW.tar 2.6 Mb (http)(custom) TAR (of BED)
GSE149877_combUnionReadsWithLabels.txt.gz 1.6 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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