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Series GSE152317 Query DataSets for GSE152317
Status Public on Dec 02, 2020
Title Identification of BBOX1 as a Therapeutic Target in Triple-Negative Breast Cancer
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Triple-negative breast cancer (TNBC) is an aggressive and highly lethal disease. Because of its heterogeneity and lack of hormone receptors or HER2 expression, targeted therapy is limited. Here, by performing a functional siRNA screening for 2-OG–dependent enzymes, we identified gamma-butyrobetaine hydroxylase 1 (BBOX1) as an essential gene for TNBC tumorigenesis. BBOX1 depletion inhibits TNBC cell growth while not affecting normal breast cells. Mechanistically, BBOX1 binds with the calcium channel inositol-1,4,5-trisphosphate receptor type 3 (IP3R3) in an enzymatic-dependent manner and prevents its ubiquitination and proteasomal degradation. BBOX1 depletion suppresses IP3R3-mediated endoplasmic reticulum calcium release, therefore impairing calcium-dependent energy-generating processes including mitochondrial respiration and mTORC1-mediated glycolysis, which leads to apoptosis and impaired cell-cycle progression in TNBC cells. Therapeutically, genetic depletion or pharmacologic inhibition of BBOX1 inhibits TNBC tumor growth in vitro and in vivo. Our study highlights the importance of targeting the previously uncharacterized BBOX1–IP3R3–calcium oncogenic signaling axis in TNBC.
 
Overall design RNA-seq of MDA-MB-468 cells treated with shRNA to BBOX1 or scrambled control
 
Contributor(s) Simon JM, Zhang Q
Citation(s) 32690540
Submission date Jun 11, 2020
Last update date May 10, 2023
Contact name Jeremy Simon
E-mail(s) jsimon@ds.dfci.harvard.edu, jeremy_simon@med.unc.edu
Organization name Dana-Farber Cancer Institute
Department Department of Data Science
Street address 450 Brookline Ave
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platforms (1)
GPL23227 BGISEQ-500 (Homo sapiens)
Samples (9)
GSM4612771 MDA-MB-468_shBBOX1_ctl_Rep1
GSM4612772 MDA-MB-468_shBBOX1_ctl_Rep2
GSM4612773 MDA-MB-468_shBBOX1_ctl_Rep3
Relations
BioProject PRJNA638951
SRA SRP266977

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Supplementary file Size Download File type/resource
GSE152317_Zhang_shBBOX1_VST_batchcorrected.txt.gz 1.1 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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