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| Status |
Public on Dec 24, 2020 |
| Title |
RNA-seq in Hs578T cells stimulated with TGF-β |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Transforming growth factor-β (TGF-β) comprises a key component in the tumor microenvironment. It is reported that TGF-β can be pro-tumorigenic or anti-tumorigenic depending on various contexts. Some of the triple negative breast cancers highly express TGF-β, but pro-tumorigenic function of TGF-β in triple negative breast cancer cells is not fully known. Therefore, we analyzed genome-wide gene expression changes after stimulation with TGF-β in a triple negative breast cancer cell line, Hs578T cells.
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| Overall design |
Expression of mRNA in Hs578T cells stimulated with TGF-β.
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| Contributor(s) |
Tamura Y, Koinuma D, Miyazono K |
| Citation(s) |
33342034 |
| Submission date |
Jun 13, 2020 |
| Last update date |
Dec 24, 2020 |
| Contact name |
Daizo Koinuma |
| E-mail(s) |
d-koinuma@umin.ac.jp
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| Organization name |
University of Tokyo
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| Department |
Pathology
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| Street address |
Hongo 7-3-1, Bunkyo-ku
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| City |
Tokyo |
| ZIP/Postal code |
113-0033 |
| Country |
Japan |
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| Platforms (1) |
| GPL17303 |
Ion Torrent Proton (Homo sapiens) |
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| Samples (4)
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| GSM4614928 |
Hs578T, unstimulated control, replicate 1 |
| GSM4614929 |
Hs578T stimualted with TGF-β, replicate 1 |
| GSM4614930 |
Hs578T, unstimulated control, replicate 2 |
| GSM4614931 |
Hs578T stimualted with TGF-β, replicate 2 |
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| Relations |
| BioProject |
PRJNA639269 |
| SRA |
SRP267172 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE152414_Hs578T_RNAsequence.fpkm_tracking.gz |
1.4 Mb |
(ftp)(http) |
FPKM_TRACKING |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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