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Series GSE153352 Query DataSets for GSE153352
Status Public on Nov 18, 2020
Title Plasma cells are enriched in localized prostate cancer in black men and are associated with improved outcomes [Discovery Cohort]
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Black men die more often of prostate cancer (PC) yet, interestingly, may derive greater survival benefits from immunotherapy. Since no signatures of immune-responsiveness exist for PC, we explored race-based immune-profiles to identify vulnerabilities.
Black men have increases in plasma cell infiltrate and associated augmented NK cell and IgG activity. These findings are associated with improved survival and nominate plasma cells as drivers of PC immune-responsiveness.
 
Overall design This discovery cohort was comprised of two groups of patients who underwent radical prostatectomy and no additional treatment until metastatic recurrence at Johns Hopkins Medical Institute (JHMI). The first group consisted of 355 intermediate- or high-risk patients treated between 1995 and 2005, of which 33 were Black.1 The second group consisted 143 Black men treated from 2006 to 20102 for a total of 355 White men and 176 Black men. To prepare for matching, 6 (1%) men were excluded due to missing data on pathological stage. All men with grade group 1 disease were excluded given the disproportionate numbers among Black men (24 vs 6; 30 total, 6%). Finally, the cohort was randomly sorted before using the “matchit” function from the “Matchit” R package to derive a final grade- and stage-matched cohort of 300 men, 150 each of Black and White men. Race was defined by self-identification in this cohort.
 
Contributor(s) Weiner AB, Vidotto T, Liu Y, Mendes AA, Salles DC, Faisal F, Murali S, McFarlane M, Imada EL, Zhao X, Li Z, Davicioni E, Marchionni L, Chinnaiyan AM, Freedland SJ, Spratt DE, Wu J, Lotan TL, Schaeffer EM
Citation(s) 33568675
Submission date Jun 26, 2020
Last update date Feb 17, 2021
Contact name Elai Davicioni
E-mail(s) elai@decipherbio.com
Organization name Decipher Biosciences, Inc.
Street address 1152 Mainland St, Suite 430
City Vancouver
State/province BC
ZIP/Postal code V6B 4X2
Country Canada
 
Platforms (1)
GPL5175 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version]
Samples (300)
GSM4641635 PCA.1: prostate_cancer_primary_1
GSM4641636 PCA.2: prostate_cancer_primary_2
GSM4641637 PCA.3: prostate_cancer_primary_3
This SubSeries is part of SuperSeries:
GSE157548 Plasma cells are enriched in localized prostate cancer in black men and are associated with improved outcomes
Relations
BioProject PRJNA644900

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE153352_RAW.tar 5.6 Gb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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