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Series GSE153519 Query DataSets for GSE153519
Status Public on Mar 02, 2021
Title Dynamic extrinsic pacing of the HOX clock in human axial progenitors control motor neuron subtype specification
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Rostro-caudal patterning of vertebrates depends on the temporally progressive activation of HOX genes within axial stem cells that fuel axial embryo elongation. Whether HOX genes sequential activation, the “HOX clock”, is paced by intrinsic chromatin-based timing mechanisms or by temporal changes in extrinsic cues remains unclear. Here, we studied HOX clock pacing in human pluripotent stem cells differentiating into spinal cord motor neuron subtypes which are progenies of axial progenitors. We show that the progressive activation of caudal HOX genes is controlled by a dynamic increase in FGF signaling. Blocking FGF pathway stalled induction of HOX genes, while precocious increase in FGF alone, or with GDF11 ligand, accelerated the HOX clock. Cells differentiated under accelerated HOX induction generated appropriate posterior motor neuron subtypes found along the human embryonic spinal cord. The HOX clock is thus dynamically paced by exposure parameters to secreted cues. Its manipulation by extrinsic factors alleviates temporal requirements to provide unprecedented synchronized access to human cells of multiple, defined, rostro-caudal identities for basic and translational applications.
 
Overall design human ES cells SA001
 
Contributor(s) Mouilleau V, Jarrige M, Martinat C, Nedelec S
Citation(s) 33782043
Submission date Jun 29, 2020
Last update date Jul 01, 2021
Contact name Stephane NEDELEC
E-mail(s) stephane.nedelec@inserm.fr
Organization name Institut du Fer à Moulin
Lab Stem cells and Neurodevelopment
Street address 17 rue du fer a moulin
City PARIS
ZIP/Postal code 75005
Country France
 
Platforms (1)
GPL17303 Ion Torrent Proton (Homo sapiens)
Samples (8)
GSM4646347 hESC SA001 mTser n1
GSM4646348 hESC SA001 mTser n2
GSM4646349 D2 axial progenitors n1
Relations
BioProject PRJNA642885
SRA SRP269264

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE153519_normalized_gene_abundance_measurements_RPM.txt.gz 544.8 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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