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Series GSE157014 Query DataSets for GSE157014
Status Public on Aug 28, 2020
Title 4U-DMS-MaP probing of nascent ribosomes
Organism Escherichia coli
Experiment type Other
Summary Probe rRNA structural changes during assembly with dimethyl sulfate
 
Overall design Nascent transcripts were metabolically pulse-labelled with 4-thio-urdine and rifampicin, then treated with dimentyl sulfate to probe structural changes
 
Contributor(s) Hao Y, Hulscher R, Zinshteyn B, Woodson S
Citation(s) 38260533
Submission date Aug 27, 2020
Last update date Feb 09, 2024
Contact name Yumeng Hao
E-mail(s) yhao12@jhu.edu
Phone 4105167348
Organization name Johns Hopkins University
Department Biophysics
Lab Sarah A. Woodson
Street address 3400 N. Charles Street, Jenkins 408
City Baltimore
State/province Maryland
ZIP/Postal code 21218
Country USA
 
Platforms (1)
GPL14548 Illumina HiSeq 2000 (Escherichia coli)
Samples (13)
GSM4750892 ND_ctrl
GSM4750893 DMS_ctrl
GSM4750894 4U_ND
Relations
BioProject PRJNA659772
SRA SRP279092

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE157014_MRE600_full_rRNA_consensus.txt.gz 1.7 Kb (ftp)(http) TXT
GSE157014_mutation_rates_all_datasets.tsv.gz 286.6 Kb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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