|
| Status |
Public on Jul 15, 2021 |
| Title |
Single cell sequencing of posterior axis development in gallus gallus |
| Organism |
Gallus gallus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Single cell analysis of 3 developmental stages to study the progenitors of axis formation
|
| |
|
| Overall design |
Dissection of stage 5, 6 somites and 35 somites
Stage 5 HH files: st51.counts.tsv.gz; st52.counts.tsv.gz; st5_cell_names.txt ;st5_cell_bc_seqs.txt ; st5_gene_names.txt
Stage 6 somites: 6s1.counts.tsv.gz; 6s2.counts.tsv.gz; 6s_cell_names.txt ;6s_cell_bc_seqs.txt ; 6s_gene_names.txt
Stage 35 somites: 35s1.counts.tsv.gz; 35s2.counts.tsv.gz; 35s_cell_names.txt ;35s_cell_bc_seqs.txt ; 35s_gene_names.txt
|
| |
|
| Contributor(s) |
Guillot C, Pourquie O |
| Citation(s) |
34227938 |
| Submission date |
Nov 20, 2020 |
| Last update date |
Jul 15, 2021 |
| Contact name |
Charlene Guillot (Ryan) |
| E-mail(s) |
charlene_guillot@hms.harvard.edu
|
| Phone |
8579192539
|
| Organization name |
Brigham and Women's hospital
|
| Department |
Pathology
|
| Lab |
Olivier Pourquie
|
| Street address |
60 Fenwood Road
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL19787 |
Illumina NextSeq 500 (Gallus gallus) |
|
| Samples (1) |
|
| Relations |
| BioProject |
PRJNA679887 |
| SRA |
SRP294286 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE161905_35s1.counts.tsv.gz |
3.1 Mb |
(ftp)(http) |
TSV |
| GSE161905_35s1_cell_bc_seqs.txt.gz |
107 b |
(ftp)(http) |
TXT |
| GSE161905_35s1_cell_names.txt.gz |
13.6 Kb |
(ftp)(http) |
TXT |
| GSE161905_35s2.counts.tsv.gz |
3.3 Mb |
(ftp)(http) |
TSV |
| GSE161905_35s2_cell_bc_seqs.txt.gz |
106 b |
(ftp)(http) |
TXT |
| GSE161905_35s2_cell_names.txt.gz |
13.5 Kb |
(ftp)(http) |
TXT |
| GSE161905_35s_gene_names.txt.gz |
32.7 Kb |
(ftp)(http) |
TXT |
| GSE161905_6s1.counts.tsv.gz |
4.9 Mb |
(ftp)(http) |
TSV |
| GSE161905_6s1_cell_bc_seqs.txt.gz |
258 b |
(ftp)(http) |
TXT |
| GSE161905_6s1_cell_names.txt.gz |
74.3 Kb |
(ftp)(http) |
TXT |
| GSE161905_6s1_gene_names.txt.gz |
32.7 Kb |
(ftp)(http) |
TXT |
| GSE161905_6s2.counts.tsv.gz |
5.0 Mb |
(ftp)(http) |
TSV |
| GSE161905_6s2_cell_bc_seqs.txt.gz |
262 b |
(ftp)(http) |
TXT |
| GSE161905_6s2_cell_names.txt.gz |
76.5 Kb |
(ftp)(http) |
TXT |
| GSE161905_6s_gene_names.txt.gz |
32.7 Kb |
(ftp)(http) |
TXT |
| GSE161905_README_samples_information.txt |
1.8 Kb |
(ftp)(http) |
TXT |
| GSE161905_st51.counts.tsv.gz |
8.1 Mb |
(ftp)(http) |
TSV |
| GSE161905_st51_cell_bc_seqs.txt.gz |
260 b |
(ftp)(http) |
TXT |
| GSE161905_st51_cell_names.txt.gz |
74.6 Kb |
(ftp)(http) |
TXT |
| GSE161905_st52.counts.tsv.gz |
8.5 Mb |
(ftp)(http) |
TSV |
| GSE161905_st52_cell_bc_seqs.txt.gz |
241 b |
(ftp)(http) |
TXT |
| GSE161905_st52_cell_names.txt.gz |
67.2 Kb |
(ftp)(http) |
TXT |
| GSE161905_st5_gene_names.txt.gz |
32.7 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
