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Series GSE165277 Query DataSets for GSE165277
Status Public on Sep 01, 2021
Title Therapeutic delivery of transcription factor HNF4A mRNA attenuates liver fibrosis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The mRNA-based therapeutics such as COVID-19 vaccines are rapidly progressing into the clinic with a tremendous potential of benefiting millions of people worldwide. Therapeutic targeting of injuries that require transient restoration of proteins by mRNA delivery is an attractive aspect, however until recently, it has remained poorly explored. In this study, we examined for the first time therapeutic utility of mRNA delivery in liver fibrosis and cirrhosis, which contributes to millions of deaths, annually. Here, demonstrated the therapeutic efficacy of the human transcription factor hepatic nuclear factor alpha (HNF4A) encoding mRNA in murine chronically injured liver leading to fibrosis and cirrhosis. We investigated restoration of hepatocyte functions by HNF4A mRNA transfection in vitro, and analyzed the attenuation of liver fibrosis and cirrhosis in multiple mouse models, by delivering hepatocyte-targeted biodegradable lipid nanoparticles (LNP) encapsulating HNF4A mRNA. To identify potential mechanism, we performed microarray-based gene expression profiling, single cell RNA sequencing, and chromatin immunoprecipitation. We used primary liver cells and human liver buds for further functional validation. Expression of HNF4A encoding mRNA led to restoration of metabolic activity of fibrotic primary murine and human hepatocytes in vitro. Repeated in vivo delivery of HNF4A mRNA encapsulated-LNP induced a robust inhibition of fibrogenesis in four independent mouse models of hepatotoxin- and cholestasis-induced liver fibrosis. Mechanistically, we discovered that paraoxonase 1 is a direct target of HNF4A and it contributes to HNF4A-mediated attenuation of liver fibrosis via modulation of liver macrophages and hepatic stellate cells. Collectively, our findings provide the first direct preclinical evidence of the applicability of HNF4A mRNA therapeutics for the treatment of fibrosis in the liver.
 
Overall design Single cell RNA-seq analysis of control and HNF4A treated mice. The Control data is split in 12 fastq files. The HNF4A data is split into 12 fastq files.
 
Contributor(s) Yang T, Poenisch M, Dai Z, Hu Q, Khanal R, Li R, Song G, Yuan Q, Yao Q, Shen X, Taubert R, Engel B, Jaeckel E, Falk CS, Schambach A, Gerovska D, Araúzo-Bravo MJ, Manns MP, Horscroft N, Balakrishnan A, Cantz T, Chevessier F, Ott M, Sharma AD
Citation(s) 34453962
Submission date Jan 21, 2021
Last update date Jan 15, 2022
Contact name Marcos J. Araúzo-Bravo
E-mail(s) mararabra@yahoo.co.uk
Phone +34 943 00 6108
Organization name Max Planck Institute for Molecular Biomedicine
Department Cell and Developmental Biology
Lab Computational Biology and Bionformatics
Street address Rogentstrasse
City Muenster
ZIP/Postal code 48149
Country Germany
 
Platforms (1)
GPL21626 NextSeq 550 (Mus musculus)
Samples (2)
GSM5029342 Liver, Control, rep1
GSM5029343 Liver, HNF4A, rep1
Relations
BioProject PRJNA693856
SRA SRP302754

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Supplementary file Size Download File type/resource
GSE165277_Sharma-adata_raw_x-10clusters.csv.gz 39.3 Mb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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