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Series GSE165927 Query DataSets for GSE165927
Status Public on Jun 02, 2021
Title Long non-coding RNA lnc-TSSK2-8 activates canonical Wnt/β-catenin signaling through small shock proteins HSPA6 and CRYAB
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Congenital heart defect (CHD) is the most common birth defect worldwide. Copy number variations (CNVs) have been revealed as an important source of pathogenic factor of CHD. 22q11.2 deletion syndrome is the most common microdeletion disorder which has been frequently associated with conotruncal malformations. By now, the dosage sensitive geneTBX1 has been adopted as the major pathogenic gene responsible for 22q11.2 deletion-related heart defects. Here we report the lncRNA lnc-TSSK2-8, which is encompassed in the 22q11.2 region, could activate the canonical Wnt/𝛃-catenin signaling by protecting 𝛃-catenin from ubiquitination and degradation. Such effects were mediated by two short heat shock proteins HSPA6 and CRYAB, whose expression were regulated by lnc-TSSK2-8 through the ceRNA mechanism. In clinical practice, pathogenesis of CNV were always attributed to haploinsufficiency of protein coding genes. Here we report the 22q11.2 lncRNA lnc-TSSK2-8 significantly activate canonical Wnt/ 𝛃-catenin signaling, which has major roles in cardiac out flow tract development and should act upstream of TBX1. Our results suggested that lncRNAs should contribute to the etiology of CNV related CHD.
 
Overall design TSSK2-8 overexpression
 
Contributor(s) Wang B, Fa J
Citation(s) 34041241
Submission date Feb 01, 2021
Last update date Jun 02, 2021
Contact name Bo Wang
E-mail(s) booew@163.com
Organization name Shanghai Children's Medical Center
Street address 1678 Dongfang Road
City Shanghai
ZIP/Postal code 200127
Country China
 
Platforms (1)
GPL23227 BGISEQ-500 (Homo sapiens)
Samples (6)
GSM5058311 HEK293-lnc-TSSK2-8-Overexpression_rep1
GSM5058312 HEK293-lnc-TSSK2-8-Overexpression_rep2
GSM5058313 HEK293-lnc-TSSK2-8-Overexpression_rep3
Relations
BioProject PRJNA698585
SRA SRP304142

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Supplementary file Size Download File type/resource
GSE165927_gencode_counts_symbol.tsv.gz 492.5 Kb (ftp)(http) TSV
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Raw data are available in SRA
Processed data are available on Series record

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