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Series GSE168617 Query DataSets for GSE168617
Status Public on Mar 11, 2021
Title miR-15a reprograms activated hepatic stellate cells back toward quiescence
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Cell reprogramming enables dedifferentiation to generate induced pluripotent stem cells or transdifferentiation to produce desired terminally differentiated cell types. However, the concept of forced reprogramming has not been extended to converting the activation status of specialized cell types such as hepatic stellate cell (HSC) which, once activated, plays a central role in promoting liver fibrosis. We identified miR-15a as a key driver to reprogram activated HSC back toward quiescence, partly by directly targeting Wisp1, to generate what we designate as induced quiescent-like HSC (iqHSC). iqHSCs had a morphologic, transcriptional, and functional phenotype similar to that of truly quiescent HSCs. Finally, performing cell therapy with iqHSCs attenuated hepatic inflammation and fibrosis in mouse models of liver injury induced by toxin, biliary obstruction, or diet.
 
Overall design We performed RNA sequencing of hepatic stellate cells in various activation states to predict a set of genes that have a higher likelihood of being targeted by miR-15a.
 
Contributor(s) Kim B, Zhu S, Hoshida Y, Choi MY
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Submission date Mar 10, 2021
Last update date Jun 29, 2022
Contact name Shijia Zhu
E-mail(s) shijia.zhu@utsouthwestern.edu
Organization name University of Texas Southwestern Medical Center
Street address 5323 Harry Hines Blvd
City DALLAS
State/province Texas
ZIP/Postal code 75390
Country USA
 
Platforms (1)
GPL21626 NextSeq 550 (Mus musculus)
Samples (8)
GSM5151338 s1a_HSCquiescent
GSM5151339 s1b_HSCquiescent
GSM5151340 s2a_HSCactivated
Relations
BioProject PRJNA713190
SRA SRP310087

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE168617_ChoiHSC_miR15a_readCount.gct.gz 251.2 Kb (ftp)(http) GCT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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