 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Mar 18, 2021 |
| Title |
Transcriptomic analysis of acquired resistance to a novel trimethoprim-based photoswitchable antibiotic in Escherichia coli CS1562 |
| Organism |
Escherichia coli |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Effect of three different antimicrobial compounds, trimethoprim(TMP), cis-tetra-ortho-chloroazobenzene-trimethoprim (TCATa) and trans-tetra-ortho-chloroazobenzene-trimethoprim (TCATd) , on the resistance development and transcriptome of the E. coli strain CS1562. In addition, acontrol sample was taken along of the propagated parent strain (CS1562) without the addition of any compounds.
|
| |
|
| Overall design |
4 samples; no replicates
|
| |
|
| Contributor(s) |
Lauxen AI, Kobauri P, Galenkamp NS, Maglia G, Szymanski W, Feringa BL, Kuipers OP |
| Citation(s) |
33919397 |
| Submission date |
Mar 17, 2021 |
| Last update date |
Jun 03, 2021 |
| Contact name |
Anne de Jong |
| E-mail(s) |
anne.de.jong@rug.nl
|
| Phone |
+31 50 363 2047
|
| Organization name |
university of Groningen
|
| Department |
Molecular Genetics
|
| Street address |
Nijenborgh 7
|
| City |
Groningen |
| ZIP/Postal code |
9747 AG |
| Country |
Netherlands |
| |
|
| Platforms (1) |
| GPL14548 |
Illumina HiSeq 2000 (Escherichia coli) |
|
| Samples (4)
|
|
| Relations |
| BioProject |
PRJNA715103 |
| SRA |
SRP311033 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE169069_RAW.tar |
270.0 Kb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
Less...
More...