|
| Status |
Public on Mar 27, 2021 |
| Title |
Nuclear compartmentalization of TERT mRNA and TUG1 lncRNA is driven by intron retention |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Third-party reanalysis
|
| Summary |
We performed poly(A) enriched RNA sequencing of HeLa, U-2 OS and mES cells.
This series includes two re-analyzed samples from mouse: GSM1032506 and GSM1032518 (denoted as iPS.A and iPS.B, respectively). The re-analyzed data for these samples are included in the file INCLUSION_LEVELS_FULL-Mm25.tab.gz.
This series includes three re-analyzed samples from human: GSM808734, GSM1023087 and GSM1023070 (denoted as iPS.A, iPS.B and iPS.C, respectively). The re-analyzed data for these samples are included in the file INCLUSION_LEVELS_FULL-Hs23.tab.gz
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| |
|
| Overall design |
Analysis of intron retention in indicated cell lines.
|
| |
|
| Contributor(s) |
Dumbovic G, Braunschweig U, Much C, Blencowe B, Rinn J |
| Citation(s) |
34083519 |
| Submission date |
Mar 26, 2021 |
| Last update date |
Jun 15, 2021 |
| Contact name |
Gabrijela Dumbovic |
| E-mail(s) |
gabrijela.dumbovic@colorado.edu, gabrijela.dumbovic@gmail.com
|
| Organization name |
University of Colorado
|
| Department |
BioFrontiers
|
| Lab |
John Rinn lab
|
| Street address |
3415 Colorado avenue
|
| City |
Boulder |
| State/province |
Colorado |
| ZIP/Postal code |
80303 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
|
| Samples (5)
|
|
| Relations |
| Reanalysis of |
GSM1032506 |
| Reanalysis of |
GSM1032518 |
| Reanalysis of |
GSM808734 |
| Reanalysis of |
GSM1023087 |
| Reanalysis of |
GSM1023070 |
| BioProject |
PRJNA717785 |
| SRA |
SRP312357 |
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