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| Status |
Public on Sep 09, 2009 |
| Title |
Study of Differential Gene Expression in Metastatic Breast Tumors |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
Introduction: The prognosis for patients with breast tumor metastases to brain is extremely poor. Identification of prognostic molecular markers of the metastatic process is critical for designing therapeutic modalities for reducing the occurrence of metastasis. Although ubiquitously present in most human organs, calcium-activated potassium (BK) channel is significantly upregulated in breast cancer cells. In this study we investigated the role of KCNMA1 gene, which encodes α subunit of KCa channels (BK channels) in breast cancer metastasis and invasion. Methods: We performed Global exon array to study the expression of KCNMA1 in metastatic breast cancer in brain, compared its expression in primary breast cancer and breast cancers metastatic to other organs, and validated the findings by RT-PCR. Immunohistochemistry was performed to study the expression and localization of α subunit of KCa channel protein in primary and metastatic breast cancer tissues and breast cancer cell lines. We performed matrigel invasion, transendothelial migration and membrane potential assays in established lines of normal breast cells (MCF-10A), non-metastatic breast cancer (MCF-7), non-brain metastatic breast cancer cells (MDA-MB-231), and brain-specific metastatic breast cancer cells (MDA-MB-361) to study whether KCa channel inhibition attenuates breast tumor invasion and metastasis using KCNMA1 knockdown with siRNA and biochemical inhibition with IBTX (Iberiotoxin). Results: The Global exon array and RT-PCR showed higher KCNMA1 expression in metastatic breast cancer in brain compared to metastatic breast cancers in other organs. Our results clearly show that metastatic breast cancer cells exhibit increased BK channel activity, leading to greater invasiveness and transendothelial migration, both of which could be attenuated by blocking KCNMA1. Conclusion: Determining the relative abundance of BK channel over expression in breast cancer metastatic to brain and the mechanism of its action in brain metastasis will provide a unique opportunity to identify and differentiate between low grade breast tumors that are at high risk for metastasis from those at low risk for metastasis. This distinction would in turn allow for the appropriate and efficient application of effective treatments while sparing patients with low risk for metastasis from the toxic side effects of chemotherapy.
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| Overall design |
Three cell lines representing primary breast tumor (MCF-7), metastatic breast tumors to other organs excluding brain (MDA-MB-231), and metastatic breast tumors to brain (MDA-MB 361) were run in triplicates to identify differentially expressed genes. Metastatic breast tumor cell lines were compared with primary breast tumor cell line with respect to their gene expression.
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| Contributor(s) |
Ningaraj NS, Sankpal UT, Khaitan D |
| Citation(s) |
19640305 |
| Submission date |
Jul 08, 2009 |
| Last update date |
Feb 18, 2019 |
| Contact name |
Nagendra Ningaraj |
| Phone |
912-350-0958
|
| Fax |
912-350-1281
|
| Organization name |
Memorial University Medical Center
|
| Department |
Anderson Cancer Institute
|
| Lab |
Laboratory of Oncology Research
|
| Street address |
4700 Waters Avenue
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| City |
Savannah |
| State/province |
GA |
| ZIP/Postal code |
31404 |
| Country |
USA |
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| Platforms (1) |
| GPL5175 |
[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version] |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA117767 |
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