|
| Status |
Public on Apr 30, 2021 |
| Title |
Matrisome gene expression in treatment-naïve and chemotherapy-treated primary tumor and metastatic tissues of high-grade serous ovarian carcinoma |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The extracellular matrix (ECM) of tumors differ significantly from that in normal tissues. Biochemical cues from the tumor ECM critically affect intratumoral signaling contributing to tumor malignancy, growth and response to treatment.
In this study, we characterized the expression of 1,027 genes encoding core extracellular matrix and associated proteins defined as the matrisome (Naba et al., 2016) in treatment-naïve and chemotherapy-treated high-grade serous ovarian carcinoma (HGSC) using longitudinal patient cohort consisting of 165 samples.
The expression profiling was conducted by using 45 primary tumor samples, 93 metastatic omental-peritoneal-mesenteric tissue samples and 27 ascites-derived cancer cell samples from HGSC patients. By comparing the matrisome gene expression between the primary tumor and metastatic tissues pre- and post-chemotherapy, we identified the cancer cell surrounding fibro-inflammatory tumor-microenvironment to be markedly different in primary tumors compared to metastatic tissues and to change in response to chemotherapy, in terms of both the extent and type of the extracellular matrix proteins. Further study on these specific genes may aid finding potential therapeutic ECM gene targets to enhance HGSC patient outcome.
|
| |
|
| Overall design |
Transcriptome profiling analyses of tumor matrisome were performed on 165 high-grade serous ovarian carcinoma patient samples including both treatment-naïve and post-chemotherapy tissue and ascites-derived cancer cells.
The raw RNA sequencing data that these effective counts are based on have been deposited in the European Genome-phenome Archive under the accession code (EGAD00001006456, under the study EGAS00001004714).
|
| |
|
| Contributor(s) |
Pietilä EA, Jamalzadeh S, Zhang K, Lehtonen R, Hautaniemi S, Lehti K |
| Citation(s) |
34162871 |
| Submission date |
Apr 27, 2021 |
| Last update date |
Jul 14, 2021 |
| Contact name |
Elina A Pietilä |
| E-mail(s) |
elina.a.pietila@helsinki.fi
|
| Organization name |
University of Helsinki
|
| Street address |
Haartmaninkatu 8
|
| City |
Helsinki |
| ZIP/Postal code |
00014 |
| Country |
Finland |
| |
|
| Platforms (3) |
|
| Samples (175)
|
|
| Relations |
| BioProject |
PRJNA725488 |
Less...
More...