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GEO accession:
Series GSE173587
Query DataSets for GSE173587
Status
Public on May 25, 2022
Title
HIC2 represses BCL11A transcription to regulate hemoglobin switching during development
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Non-coding RNA profiling by array
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
35941187
Submission date
Apr 29, 2021
Last update date
Aug 11, 2022
Contact name
Peng Huang
E-mail(s)
waliays@gmail.com
Organization name
Guangzhou Medical University
Department
GMU-GIBH Joint School of Life Sciences
Lab
Peng Huang
Street address
Xinzao, Panyu District
City
Guangzhou
State/province
Guangdong
ZIP/Postal code
511436
Country
China
Platforms (2)
GPL30172
NextSeq 2000 (Mus musculus)
GPL30173
NextSeq 2000 (Homo sapiens)
Samples (65)
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More...
GSM5271188
ATAC-Seq HUDEP2 cells WT rep1
GSM5271189
ATAC-Seq HUDEP2 cells WT rep2
GSM5271190
ATAC-Seq HUDEP2 cells HIC2 OE rep1
GSM5271191
ATAC-Seq HUDEP2 cells HIC2 OE rep2
GSM5271192
ATAC-Seq HUDEP1 cells WT rep1
GSM5271193
ATAC-Seq HUDEP1 cells WT rep2
GSM5271194
ATAC-Seq HUDEP1 cells HIC2 KO rep1
GSM5271195
ATAC-Seq HUDEP1 cells HIC2 KO rep2
GSM5271196
Capture-C HUDEP2 cells WT rep1
GSM5271197
Capture-C HUDEP2 cells WT rep2
GSM5271198
Capture-C HUDEP2 cells WT rep3
GSM5271199
Capture-C HUDEP2 cells WT rep4
GSM5271200
Capture-C HUDEP2 cells HIC2 OE rep1
GSM5271201
Capture-C HUDEP2 cells HIC2 OE rep2
GSM5271202
Capture-C HUDEP2 cells HIC2 OE rep3
GSM5271203
Capture-C HUDEP2 cells HIC2 OE rep4
GSM5271204
ChIP-Seq HUDEP2 cells WT input
GSM5271205
ChIP-Seq HUDEP2 cells WT GATA1 ChIP-seq rep1
GSM5271206
ChIP-Seq HUDEP2 cells WT GATA1 ChIP-seq rep2
GSM5271207
ChIP-Seq HUDEP2 cells WT H3K27ac ChIP-seq
GSM5271208
ChIP-Seq HUDEP2 cells HIC2-OE input
GSM5271209
ChIP-Seq HUDEP2 cells HIC2-OE GATA1 ChIP-seq rep1
GSM5271210
ChIP-Seq HUDEP2 cells HIC2-OE GATA1 ChIP-seq rep2
GSM5271211
ChIP-Seq HUDEP2 cells HIC2-OE H3K27ac ChIP-seq
GSM5271212
ChIP-Seq HUDEP2 cells HIC2-ER uninduced input
GSM5271213
ChIP-Seq HUDEP2 cells HIC2-ER uninduced HA ChIP-seq rep1
GSM5271214
ChIP-Seq HUDEP2 cells HIC2-ER uninduced HA ChIP-seq rep2
GSM5271215
ChIP-Seq HUDEP2 cells HIC2-ER induced input
GSM5271216
ChIP-Seq HUDEP2 cells HIC2-ER induced HA ChIP-seq rep1
GSM5271217
ChIP-Seq HUDEP2 cells HIC2-ER induced HA ChIP-seq rep2
GSM5271218
ChIP-Seq HUDEP1 cells WT input
GSM5271219
ChIP-Seq HUDEP1 cells WT GATA1 ChIP-seq rep1
GSM5271220
ChIP-Seq HUDEP1 cells WT GATA1 ChIP-seq rep2
GSM5271221
ChIP-Seq HUDEP1 cells HIC2 KO input
GSM5271222
ChIP-Seq HUDEP1 cells HIC2 KO GATA1 ChIP-seq rep1
GSM5271223
ChIP-Seq HUDEP1 cells HIC2 KO GATA1 ChIP-seq rep2
GSM5271224
ChIP-Seq G1E-ER4 cells hHIC2-OE input 1
GSM5271225
ChIP-Seq G1E-ER4 cells hHIC2-OE GATA1 ChIP-seq rep1
GSM5271226
ChIP-Seq G1E-ER4 cells hHIC2-OE GATA1 ChIP-seq rep2
GSM5271227
ChIP-Seq G1E-ER4 cells hHIC2-OE input 2
GSM5271228
ChIP-Seq G1E-ER4 cells hHIC2-OE HA ChIP-seq rep1
GSM5271229
ChIP-Seq G1E-ER4 cells hHIC2-OE HA ChIP-seq rep2
GSM5271247
RNA-Seq Primary erythroblasts GFP control
GSM5271248
RNA-Seq Primary erythroblasts HIC2 OE
GSM5271249
RNA-Seq HUDEP2 cells GFP control rep1
GSM5271250
RNA-Seq HUDEP2 cells GFP control rep2
GSM5271251
RNA-Seq HUDEP2 cells HIC2 OE rep1
GSM5271252
RNA-Seq HUDEP2 cells HIC2 OE rep2
GSM5530941
Fetal erythroblasts rep1
GSM5530942
Fetal erythroblasts rep2
GSM5530943
Adult erythroblasts rep1
GSM5530944
Adult erythroblasts rep2
GSM5530945
Fetal_H3K27ac_r1
GSM5530946
Fetal_H3K27ac_r2
GSM5530947
Adult_H3K27ac_r1
GSM5530948
Adult_H3K27ac_r2
GSM5530949
Fetal_GATA1_r1
GSM5530950
Fetal_GATA1_r2
GSM5530951
Adult_GATA1_r1
GSM5530952
Adult_GATA1_r2
GSM5800046
ChIP-Seq Newborn erythroblasts HIC2
GSM5800047
RNA-Seq Primary newborn erythroblasts control rep1
GSM5800048
RNA-Seq Primary newborn erythroblasts control rep2
GSM5800049
RNA-Seq Primary newborn erythroblasts HIC2 KO rep1
GSM5800050
RNA-Seq Primary newborn erythroblasts HIC2 KO rep2
This SuperSeries is composed of the following SubSeries:
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More...
GSE173582
HIC2 represses BCL11A transcription to regulate hemoglobin switching during development (ATAC-Seq)
GSE173583
HIC2 represses BCL11A transcription to regulate hemoglobin switching during development (Capture-C)
GSE173584
HIC2 represses BCL11A transcription to regulate hemoglobin switching during development (ChIP-Seq)
GSE173586
HIC2 represses BCL11A transcription to regulate hemoglobin switching during development (RNA-Seq)
GSE182530
HIC2 represses BCL11A transcription to regulate hemoglobin switching during development [CUT&RUN]
Relations
BioProject
PRJNA726207
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File type/resource
GSE173587_RAW.tar
8.3 Gb
(http)
(custom)
TAR (of BED, BIGWIG, TSV)
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