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GEO accession:
Series GSE173755
Query DataSets for GSE173755
Status
Public on Dec 14, 2022
Title
Multi-omics and machine learning reveal context-specific gene regulatory activities of PML-RARA in Acute Promyelocytic Leukemia
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Web link
https://www.nature.com/articles/s41467-023-36262-0
Citation(s)
36759620
Submission date
May 03, 2021
Last update date
Mar 22, 2023
Contact name
Cameron Osborne
E-mail(s)
cameron.osborne@kcl.ac.uk
Organization name
King's College London
Department
Medical and Molecular Genetics
Street address
Guy's Hospital Campus
City
London
ZIP/Postal code
SE1 9RT
Country
United Kingdom
Platforms (3)
GPL15520
Illumina MiSeq (Homo sapiens)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL30173
NextSeq 2000 (Homo sapiens)
Samples (28)
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GSM5277819
U937-PR9 Control rep1 omni ATAC-seq
GSM5277820
U937-PR9 Control rep2 omni ATAC-seq
GSM5277821
U937-PR9 Induced rep1 omni ATAC-seq
GSM5277822
U937-PR9 Induced rep2 omni ATAC-seq
GSM5277823
U937-PR9 Control rep1 Capture Hi-C
GSM5277824
U937-PR9 Control rep2 Capture Hi-C
GSM5277825
U937-PR9 Induced rep1 Capture Hi-C
GSM5277826
U937-PR9 Induced rep2 Capture Hi-C
GSM5277827
APL patient 1 Capture Hi-C
GSM5277828
APL patient 2 Capture Hi-C
GSM5277829
U937-PR9 Control Cut&Run PML-RARA antibody replicate 1
GSM5277830
U937-PR9 Control Cut&Run PML-RARA antibody replicate 2
GSM5277831
U937-PR9 Control Cut&Run RARA antibody replicate 1
GSM5277832
U937-PR9 Control Cut&Run RARA antibody replicate 2
GSM5277833
U937-PR9 Zinc Cut&Run PML-RARA antibody replicate 1
GSM5277834
U937-PR9 Zinc Cut&Run PML-RARA antibody replicate 2
GSM5277835
U937-PR9 Zinc Cut&Run RARA antibody replicate 1
GSM5277836
U937-PR9 Zinc Cut&Run RARA antibody replicate 2
GSM5277837
U937-PR9 Control rep1 RNA-seq
GSM5277838
U937-PR9 Control rep2 RNA-seq
GSM5277839
U937-PR9 Induced rep1 RNA-seq
GSM5277840
U937-PR9 Induced rep2 RNA-seq
GSM5277841
APL patient 1 RNA-seq
GSM5277842
APL patient 2 RNA-seq
GSM6401760
NB4 Cut&Tag PML-RARA antibody replicate 1
GSM6401761
NB4 Cut&Tag PML-RARA antibody replicate 2
GSM6621748
ATAC-seq on Patient #74
GSM6621749
ATAC-seq on Patient #73
This SuperSeries is composed of the following SubSeries:
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GSE173751
Multi-omics and machine learning reveal context-specific gene regulatory activities of PML-RARA in Acute Promyelocytic Leukemia [ATAC-seq]
GSE173752
Multi-omics and machine learning reveal context-specific gene regulatory activities of PML-RARA in Acute Promyelocytic Leukemia [Capture Hi-C]
GSE173753
Multi-omics and machine learning reveal context-specific gene regulatory activities of PML-RARA in Acute Promyelocytic Leukemia [Cut&Run]
GSE173754
Multi-omics and machine learning reveal context-specific gene regulatory activities of PML-RARA in Acute Promyelocytic Leukemia [RNA-seq]
GSE209833
Multi-omics and machine learning reveal context-specific gene regulatory activities of PML-RARA in Acute Promyelocytic Leukemia [Cut&Tag]
GSE215101
Multi-omics and machine learning reveal context-specific gene regulatory activities of PML-RARA in Acute Promyelocytic Leukemia [APL PBMCs ATAC-seq]
Relations
BioProject
PRJNA726964
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
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Supplementary file
Size
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File type/resource
GSE173755_RAW.tar
2.6 Mb
(http)
(custom)
TAR (of NARROWPEAK)
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