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Series GSE173949 Query DataSets for GSE173949
Status Public on May 05, 2024
Title Expression data from early and macroscopic HCC lesions isolated from the Rb family Triple Knock Out model (Bulk RNA-Seq)
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary we report the expression profiles of various liver progenitor subpopulations upon inactivation of the Rb family of genes
 
Overall design YFP+ cells eventually further fractioned on the basis of Thy1 and Epcam surface marker expression are processed for bulk RNA-Seq expression analysis.
 
Contributor(s) Viatour P
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Submission date May 05, 2021
Last update date May 05, 2024
Contact name Patrick Viatour
E-mail(s) viatourp@chop.edu
Organization name Children's Hospital of Philadelphia
Street address 3501 Civic Center Blvd
City Philadelphia
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (10)
GSM5283350 bulk RNA-Seq Epcam- 1
GSM5283351 bulk RNA-Seq Epcam- 2
GSM5283352 bulk RNA-Seq CK19-derived organoids 1
This SubSeries is part of SuperSeries:
GSE173952 Expression data from early and macroscopic HCC lesions isolated from the Rb family Triple Knock Out model
Relations
BioProject PRJNA727600
SRA SRP318627

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE173949_all_counts_bulk_RNA_featureCounts.txt.gz 2.6 Mb (ftp)(http) TXT
GSE173949_all_counts_bulk_RNA_featureCounts.txt.summary.txt.gz 305 b (ftp)(http) TXT
GSE173949_all_counts_bulk_RNA_featureCounts_2.txt.gz 2.9 Mb (ftp)(http) TXT
GSE173949_all_counts_bulk_RNA_featureCounts_2.txt.summary.txt.gz 467 b (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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