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| Status |
Public on Jul 31, 2023 |
| Title |
Screening for differentially expressed circRNAs in ischemic stroke by RNA sequencing |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
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| Summary |
Acute coronary syndrome (ACS) is one of the most serious cardiovascular diseases. Percutaneous coronary intervention (PCI) combined with stent implantation improves outcomes in patients with ACS. However, the treatment of in-stent restenosis in ACS patients remains a major clinical challenge. In this study, RNA library construction and high-throughput sequencing were performed. The DEmRNA-DElncRNA co-expression analysis showed that there were 19 DElncRNA-DEmRNA relationship pairs (including 15 DEmRNA, 3 DElncRNA) in the PCI_NR/PCI_Re and NC/PCI_Re intersection group and 993 DElncRNA-DEmRNA relationship pairs (including 74 DEmRNA, 19 DElncRNA) in the NC/ACS and ACS/PCI_NR intersection group. We selected genes in the top 10 of differential expression and those involved in the co-expression of lncRNA-mRNA for diagnostic analysis. The area under curve (AUC) of PDZK1IP1, PROK2 and LAMP3 were greater than 0.7, which were 0.747, 0.769 and 0.725, respectively. It is indicated that PDZK1IP1, PROK2 and LAMP3 may as the potential diagnostic gene biomarkers in ACS.
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| Overall design |
The cohort subjected to RNA-Seq consisted of 3 patients with ACS, 3 patients with PCI_non-restenosis (PCI_NR), 3 patients with PCI_restenosis (PCI_Re) and 3 normal controls (NC). The expression of mRNA and lncRNA in blood samples.
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| Contributor(s) |
Li H |
| Citation missing |
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| Submission date |
Jul 07, 2021 |
| Last update date |
Jul 31, 2023 |
| Contact name |
haibin li |
| E-mail(s) |
lihaibindoctor@sina.com
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| Organization name |
The Third Hospital of Hebei Medical University
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| Street address |
102 Youyi Bei Dajie, Shijiazhuang, Hebei 050000
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| City |
shijiazhuang |
| ZIP/Postal code |
050000 |
| Country |
China |
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| Platforms (1) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA767696 |
| SRA |
SRP339576 |
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