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GEO accession:
Series GSE183619
Query DataSets for GSE183619
Status
Public on Apr 24, 2022
Title
BAF complex cooperates with c-Myc to orchestrate early fate decisions of CD8 T cells
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Expression profiling by array
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
35732731
NIH grant(s)
Grant ID
Grant title
Affiliation
Name
R01 AI123322
Establishment, maintenance, and consequences of asymmetric cell division in T cells
ST. JUDE CHILDREN'S RESEARCH HOSPITAL
DOUGLAS R GREEN
R35 CA231620
Mechanisms of Regulated Cell Death
ST. JUDE CHILDREN'S RESEARCH HOSPITAL
DOUGLAS R GREEN
R35 CA253188
Integrating systems immunology with immunometabolism and cancer immunity
ST. JUDE CHILDREN'S RESEARCH HOSPITAL
Hongbo Chi
P30 CA021765
Cancer Center Support Grant (CCSG)
ST. JUDE CHILDREN'S RESEARCH HOSPITAL
CHARLES ROBERTS
K99 CA256262
Improving CAR T cell therapy for brain tumors using immune competent models
ST. JUDE CHILDREN'S RESEARCH HOSPITAL
Dalia Haydar
Submission date
Sep 07, 2021
Last update date
Jul 08, 2022
Contact name
Douglas R Green
E-mail(s)
douglas.green@stjude.org
Organization name
St Jude Children's Research Hospital
Department
Immunology
Lab
Green lab
Street address
262 Danny Thomas Pl
City
Memphis
State/province
United States
ZIP/Postal code
38105
Country
USA
Platforms (2)
GPL23038
[Clariom_S_Mouse] Affymetrix Clariom S Assay, Mouse (Includes Pico Assay)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (101)
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More...
GSM5563496
Myc WT - rep 1
GSM5563497
Myc WT - rep 2
GSM5563498
Myc WT - rep 3
GSM5563499
Myc WT - rep 4
GSM5563500
Myc WT - rep 5
GSM5563501
Myc KO - rep 1
GSM5563502
Myc KO - rep 2
GSM5563503
Myc KO - rep 3
GSM5563504
Myc KO - rep 4
GSM5563505
Myc KO - rep 5
GSM5563506
Arid1a KO - rep 1
GSM5563507
Arid1a WT - rep 1
GSM5563508
Arid1a WT - rep 2
GSM5563509
Arid1a KO - rep 2
GSM5563510
Arid1a WT - rep 3, technical rep 1
GSM5563511
Arid1a KO - rep 3, technical rep 1
GSM5563512
Arid1a WT - rep 3, technical rep 2
GSM5563513
Arid1a KO - rep 3, technical rep 2
GSM5563514
Arid1a WT - rep 3, technical rep 3
GSM5563515
Arid1a KO - rep 3, technical rep 3
GSM5563516
Myc high replicate 1
GSM5563517
Myc high replicate 2
GSM5563518
Myc high replicate 3
GSM5563519
Myc low replicate 1
GSM5563520
Myc low replicate 2
GSM5563521
Myc low replicate 3
GSM5563522
Naïve replicate 1
GSM5563523
Naïve replicate 2
GSM5563524
Naïve replicate 3
GSM5563525
Arid1a KO - Arid1a binding replicate 1
GSM5563526
Arid1a KO - Arid1a binding replicate 2
GSM5563527
Arid1a KO - Brg1 binding replicate 1
GSM5563528
Arid1a KO - Brg1 binding replicate 2
GSM5563529
Arid1a KO - Myc binding replicate 1
GSM5563530
Arid1a KO - Myc binding replicate 2
GSM5563531
Arid1a WT - Arid1a binding replicate 1
GSM5563532
Arid1a WT - Arid1a binding replicate 2
GSM5563533
Arid1a WT - Brg1 binding replicate 1
GSM5563534
Arid1a WT - Brg1 binding replicate 2
GSM5563535
Arid1a WT - Myc binding replicate 1
GSM5563536
Arid1a WT - Myc binding replicate 2
GSM5563537
Myc KO - Arid1a binding replicate 1
GSM5563538
Myc KO - Arid1a binding replicate 2
GSM5563539
Myc KO - Brg1 binding replicate 1
GSM5563540
Myc KO - Brg1 binding replicate 2
GSM5563541
Myc KO - Myc binding replicate 1
GSM5563542
Myc KO - Myc binding replicate 2
GSM5563543
Myc WT - Arid1a binding replicate 1
GSM5563544
Myc WT - Arid1a binding replicate 2
GSM5563545
Myc WT - Brg1 binding replicate 1
GSM5563546
Myc WT - Brg1 binding replicate 2
GSM5563547
Myc WT - Myc binding replicate 1
GSM5563548
Myc WT - Myc binding replicate 2
GSM5563549
1st division Arid1a KO - IgG control
GSM5563550
1st division Arid1a WT - IgG control
GSM5563551
Activated - IgG control
GSM5563552
Arid1a KO ATAC-seq replicate 1
GSM5563553
Arid1a KO ATAC-seq replicate 2
GSM5563554
Arid1a KO ATAC-seq replicate 3
GSM5563555
WT ATAC-seq replicate 1
GSM5563556
WT ATAC-seq replicate 2
GSM5563557
WT ATAC-seq replicate 3
GSM5563558
Myc KO ATAC-seq replicate 1
GSM5563559
Myc KO ATAC-seq replicate 2
GSM5563560
Myc KO ATAC-seq replicate 3
GSM5563561
WT ATAC-seq replicate 4
GSM5563562
WT ATAC-seq replicate 5
GSM5563563
WT ATAC-seq replicate 6
GSM5592997
Spike_Smarcd2_rep1
GSM5592998
Spike_Smarcd2_rep2
GSM5592999
Spike_Smarcd2_rep3
GSM5593000
Spike_Smarcd2_rep4
GSM5593001
Sg_Smarcd2_rep1
GSM5593002
Sg_Smarcd2_rep2
GSM5593003
Sg_Smarcd2_rep3
GSM5593004
Sg_Smarcd2_rep4
GSM5593005
Spike_Arid1a_rep1
GSM5593006
Spike_Arid1a_rep2
GSM5593007
Spike_Arid1a_rep3
GSM5593008
Spike_Arid1a_rep4
GSM5593009
Sg_Arid1a_rep1
GSM5593010
Sg_Arid1a_rep2
GSM5593011
Sg_Arid1a_rep3
GSM5593012
Sg_Arid1a_rep4
GSM5959116
BRD-K98645985-treated ATAC-seq replicate 1
GSM5959117
BRD-K98645985-treated ATAC-seq replicate 2
GSM5959118
BRD-K98645985-treated ATAC-seq replicate 3
GSM5959119
DMSO-treated Arid1a KO ATAC-seq replicate 1
GSM5959120
DMSO-treated Arid1a KO ATAC-seq replicate 2
GSM5959121
DMSO-treated Arid1a KO ATAC-seq replicate 3
GSM5959122
DMSO-treated WT ATAC-seq replicate 1
GSM5959123
DMSO-treated WT ATAC-seq replicate 2
GSM5959124
DMSO-treated WT ATAC-seq replicate 3
GSM5966479
WT Control replicate 1
GSM5966480
WT Control replicate 2
GSM5966481
WT Control replicate 3
GSM5966482
WT Control replicate 4
GSM5966483
BRD-K98645985-treated replicate 1
GSM5966484
BRD-K98645985-treated replicate 2
GSM5966485
BRD-K98645985-treated replicate 3
GSM5966486
BRD-K98645985-treated replicate 4
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE183615
BAF complex cooperates with c-Myc to orchestrate early fate decisions of CD8 T cells (RNA-seq)
GSE183616
BAF complex cooperates with c-Myc to orchestrate early fate decisions of CD8 T cells (ATAC I)
GSE183617
BAF complex cooperates with c-Myc to orchestrate early fate decisions of CD8 T cells (Cut&Run)
GSE183618
BAF complex cooperates with c-Myc to orchestrate early fate decisions of CD8 T cells (ATAC II)
GSE184587
BAF complex cooperates with c-Myc to orchestrate early fate decisions of CD8 T cells (Microarray)
GSE198894
BAF complex cooperates with c-Myc to orchestrate early fate decisions of CD8 T cells (ATAC III)
GSE199184
BAF complex cooperates with c-Myc to orchestrate early fate decisions of CD8 T cells (RNA-seq II)
Relations
BioProject
PRJNA761407
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE183619_RAW.tar
17.9 Gb
(http)
(custom)
TAR (of BED, BIGWIG, CEL, TAB)
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