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Series GSE193005 Query DataSets for GSE193005
Status Public on Apr 29, 2024
Title Neutrophil-mediated hypoxia drives pathogenic CD8 T cell responses in cutaneous leishmaniasis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Cutaneous leishmaniasis caused by Leishmania parasites exhibits a wide range of clinical manifestations. Although parasites influence disease severity, cytolytic CD8 T cell responses mediate disease. While these responses originate in the lymph node, we found that expression of the cytolytic effector molecule granzyme B was restricted to lesional CD8 T cells in Leishmania-infected mice, suggesting that local cues within inflamed skin induced cytolytic function. Expression of Blimp-1 (Prdm1), a transcription factor necessary for cytolytic CD8 T cell differentiation, was driven by hypoxia within the inflamed skin. Hypoxia was further enhanced by the recruitment of neutrophils that consumed oxygen to produce reactive oxygen species and ultimately increased the hypoxic state and granzyme B expression in CD8 T cells. Importantly, lesions from cutaneous leishmaniasis patients exhibited hypoxia transcription signatures that correlated with the presence of neutrophils. Thus, targeting hypoxia-driven signals that support local differentiation of cytolytic CD8 T cells may improve the prognosis for patients with cutaneous leishmaniasis, as well as other inflammatory skin diseases where cytolytic CD8 T cells contribute to pathogenesis.
 
Overall design CD8 T cells isolated from the ear and draning lymph node of C57BL/6 mice infected with L. major
 
Contributor(s) Novais F, Scott P, Farias Amorim C
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Submission date Jan 04, 2022
Last update date Apr 29, 2024
Contact name Camila Farias Amorim
E-mail(s) camilafarias112@gmail.com
Organization name University of Pennsylvania
Department Pathobiology
Lab Scott Lab
Street address 380 S University Ave
City Philadelphia
State/province United States
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (6)
GSM5770609 ear_total_rep1_b2
GSM5770610 ear_total_rep2_b2
GSM5770611 ear_total_rep3_b2
Relations
BioProject PRJNA794119

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE193005_FowlerAmorim2022_counts_raw.txt.gz 1.1 Mb (ftp)(http) TXT
GSE193005_FowlerAmorim2022_filtered_normalized_cpmlog2.txt.gz 631.1 Kb (ftp)(http) TXT
GSE193005_FowlerAmorim2022_studyDesign.txt.gz 214 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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