|
| Status |
Public on Jan 11, 2022 |
| Title |
SNP array data for Wilms Tumor harboring de novo germline mutation in CTCF |
| Organism |
Homo sapiens |
| Experiment type |
Genome variation profiling by genome tiling array
Genome variation profiling by SNP array
SNP genotyping by SNP array
|
| Summary |
SNP array was combined with next generation sequencing (NGS) to identify a unique de novo germline mutation in CTCF that became homozygous in the tumor. SNP array shows an LOH through chr16q where CTCF is located.
|
| |
|
| Overall design |
CytoScan HD arrays (Affymetrix) were performed according to the manufacturer's directions on DNA extracted from Wilms tumor sample.
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| |
|
| Contributor(s) |
Font de Mora J, Gargallo P |
| Citation(s) |
35459888 |
| Submission date |
Jan 04, 2022 |
| Last update date |
Apr 27, 2022 |
| Contact name |
Jaime Font de Mora Sain |
| E-mail(s) |
jaime.fontdemora@gmail.com
|
| Phone |
+34961246646
|
| Organization name |
Instituto de Investigación Sanitaria La Fe
|
| Department |
Oncology
|
| Lab |
Laboratory of Cellular and Molecular Biology
|
| Street address |
Avenida Fernando Abril Martorell, 106
|
| City |
Valencia |
| State/province |
Valencia |
| ZIP/Postal code |
46026 |
| Country |
Spain |
| |
|
| Platforms (1) |
| GPL16131 |
[CytoScanHD_Array] Affymetrix CytoScan HD Array |
|
| Samples (1) |
|
| This SubSeries is part of SuperSeries: |
| GSE193235 |
Germline Variant in *Ctcf* Links Mental Retardation to Wilms Tumor Predisposition |
|
| Relations |
| BioProject |
PRJNA794136 |
