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Series GSE198429 Query DataSets for GSE198429
Status Public on May 08, 2024
Title An epigenetic gene signature underlies phenotype switching in early stage melanomas [Nanostring_sample1]
Organism Homo sapiens
Experiment type Expression profiling by array
Summary A 122-epigenetic gene signature distinguished low- versus high-risk early stage melanomas. We sought to validate the signature, examined clinical correlates in a cohort of primary melanomas of the skin, and studied the underlying transcriptomic aberrations and changes in chromatin in cell lines representing these two groups.
 
Overall design We analyzed 229 human melanoma patient samples and 12 human primary melanoma cell lines using a custom Nanostring codeset.
 
Contributor(s) Mendelson K, Martin T
Citation(s) 38319712
Submission date Mar 11, 2022
Last update date May 09, 2024
Contact name Tiphaine Christiane Martin
E-mail(s) tiphaine.martin@mssm.edu
Phone 2128248403
Organization name Icahn School of Medicine at Mount Sinai, Tisch Cancer Institute
Department Oncological Sciences
Lab Parsons
Street address 1470 Madison Ave
City New York
State/province 75459
ZIP/Postal code 10029
Country USA
 
Platforms (1)
GPL32055 Nanostring nCounter human array
Samples (35)
GSM5946572 melanoma_FFPE_1 [20170815_Karen01_K01_01]
GSM5946573 melanoma_FFPE_2 [20170815_Karen01_K04_04]
GSM5946574 melanoma_FFPE_3 [20170815_Karen01_K05_05]
This SubSeries is part of SuperSeries:
GSE198432 An epigenetic gene signature underlies phenotype switching in early stage melanomas.
Relations
BioProject PRJNA815288

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE198429_RAW.tar 110.0 Kb (http)(custom) TAR (of RCC)
Processed data included within Sample table
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