 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on May 06, 2010 |
| Title |
Genome-wide mapping of EBF1 binding sites in murine pre B-cells |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Early B cell factor-1 (Ebf1), a transcription factor expressed in B cells, adipocytes and neuronal cells, has been identified as a determinant in the specification of the B cell lineage in which Ebf1 acts in a regulatory network with the transcription factors E2A and Pax5. To gain insight into the molecular basis of Ebf1 function in early stage B cells, we compared the data set of a genome-wide ChIP sequencing analysis with gain- and loss-of-function transcriptome analyses.
|
| |
|
| Overall design |
Identification of genetic loci enriched by chromatin-immunoprecipitation using antibodies against EBF1.
|
| |
|
| Contributor(s) |
Treiber T, Grosschedl R |
| Citation(s) |
20451411 |
| Submission date |
Jan 20, 2010 |
| Last update date |
May 15, 2019 |
| Contact name |
Sebastian Pott |
| E-mail(s) |
spott@uchicago.edu
|
| Organization name |
University of Chicago
|
| Department |
Human Genetics
|
| Street address |
920 58th Street
|
| City |
Chicago |
| State/province |
Il |
| ZIP/Postal code |
60637 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL9185 |
Illumina Genome Analyzer (Mus musculus) |
|
| Samples (2) |
|
| Relations |
| SRA |
SRP002223 |
| BioProject |
PRJNA122623 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE19971_EBF1_mm8_significant.peaks.txt.gz |
136.9 Kb |
(ftp)(http) |
TXT |
| GSE19971_RAW.tar |
2.4 Gb |
(http)(custom) |
TAR (of TXT) |
| GSE19971_readme_peaks.txt |
668 b |
(ftp)(http) |
TXT |
SRA Run Selector |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
| Raw data are available in SRA |
|
|
|
|
 |
