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GEO accession:
Series GSE200673
Query DataSets for GSE200673
Status
Public on Jul 08, 2022
Title
Hmga2 protein loss alters nuclear envelope and affects 3D chromatin structure upon the induction of pluripotent stem cell commitment
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
35918713
Submission date
Apr 12, 2022
Last update date
Oct 07, 2022
Contact name
Pietro Zoppoli
Organization name
Università degli Studi di Napoli Federico II
Department
DMMBM
Lab
NGS facility
Street address
via S.Pansini,5
City
Napoli
State/province
Napoli
ZIP/Postal code
80131
Country
Italy
Platforms (3)
GPL16173
Illumina HiScanSQ (Mus musculus)
GPL21626
NextSeq 550 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (24)
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GSM6041865
ChIP-seq Hmga2 input
GSM6041866
ChIP-seq Hmga2 sample
GSM6041867
HiC-seq Hmga2 wt clone #1
GSM6041868
HiC-seq Hmga2 wt clone #2
GSM6041869
HiC-seq Hmga2 KO clone #1
GSM6041870
HiC-seq Hmga2 KO clone #2
GSM6042330
RNA-seq Hmga2 wt 0h biol rep 1
GSM6042331
RNA-seq Hmga2 wt 0h biol rep 2
GSM6042332
RNA-seq Hmga2 wt 0h biol rep 3
GSM6042333
RNA-seq Hmga2 KO clone #1 0h biol rep 1
GSM6042334
RNA-seq Hmga2 KO clone #1 0h biol rep 2
GSM6042335
RNA-seq Hmga2 KO clone #1 0h biol rep 3
GSM6042336
RNA-seq Hmga2 KO clone #2 0h biol rep 1
GSM6042337
RNA-seq Hmga2 KO clone #2 0h biol rep 2
GSM6042338
RNA-seq Hmga2 KO clone #2 0h biol rep 3
GSM6042339
RNA-seq Hmga2 wt 24h biol rep 1
GSM6042340
RNA-seq Hmga2 wt 24h biol rep 2
GSM6042341
RNA-seq Hmga2 wt 24h biol rep 3
GSM6042342
RNA-seq Hmga2 KO clone #1 24h biol rep 1
GSM6042343
RNA-seq Hmga2 KO clone #1 24h biol rep 2
GSM6042344
RNA-seq Hmga2 KO clone #1 24h biol rep 3
GSM6042345
RNA-seq Hmga2 KO clone #2 24h biol rep 1
GSM6042346
RNA-seq Hmga2 KO clone #2 24h biol rep 2
GSM6042347
RNA-seq Hmga2 KO clone #2 24h biol rep 3
This SuperSeries is composed of the following SubSeries:
GSE200671
Hmga2 protein loss alters nuclear envelope and affects 3D chromatin structure upon the induction of pluripotent stem cell commitment [ChIP-seq]
GSE200672
Hmga2 protein loss alters nuclear envelope and affects 3D chromatin structure upon the induction of pluripotent stem cell commitment [HiC]
GSE200691
Hmga2 protein loss alters nuclear envelope and affects 3D chromatin structure upon the induction of pluripotent stem cell commitment [RNA-seq]
Relations
BioProject
PRJNA825822
Download family
Format
SOFT formatted family file(s)
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MINiML formatted family file(s)
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE200673_RAW.tar
1.6 Gb
(http)
(custom)
TAR (of BED, BW, HIC)
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