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| Status |
Public on May 31, 2023 |
| Title |
Sequencing of the whole transcriptome of papillary thyroid cancer and lymph node metastases |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
This data was gathered from three patients who had papillary thyroid carcinoma with paired lymph node metastases. The goal of this study was to determine critical genes and pathway that influence the occurrence of lymph node metastasis in PTC patients. A total of 6 samples were analyzed, resulting in an average of 10.16 GB of data per sample. 1,967 new genes were predicted; 19,430 genes were detected as expressed, of which 17,890 were known genes and 1,540 were predicted new genes; 27,495 new transcripts were found, of which 15,846 belonged to known genes. There were a total of 27,495 novel transcripts discovered, with 15,846 belonging to new variable splice isoforms of known protein-coding genes, 1,967 to transcripts of new protein-coding genes, and 9,682 to long-stranded non-coding RNAs.
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| Overall design |
Comparative gene expression profiling analysis of RNA-seq data for primary tumor and lymph node metastasis of papillary thyroid cancer (PTC).
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| Contributor(s) |
Chang S, Chen P |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
May 06, 2022 |
| Last update date |
May 31, 2023 |
| Contact name |
Pei Chen |
| E-mail(s) |
chenpei@csu.edu.cn
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| Organization name |
Xiangya Hospital, Central South University of China
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| Lab |
Professor Shi Chang
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| Street address |
Xiangya Road No.88
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| City |
Changsha |
| State/province |
Hunan |
| ZIP/Postal code |
410000 |
| Country |
China |
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| Platforms (1) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA835872 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE202413_RNA_FPKM.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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