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Series GSE20290

Query DataSets for GSE20290

Status

Public on Feb 12, 2013

Title

Towards a comprehensive structural variation map of an individual human genome for personalized medicine

Organism

Homo sapiens

Experiment type

SNP genotyping by SNP array
Genome variation profiling by SNP array
Genome variation profiling by genome tiling array

Summary

This SuperSeries is composed of the SubSeries listed below.

Overall design

Refer to individual Series

Citation(s)

20482838

Submission date

Feb 11, 2010

Last update date

Jan 17, 2019

Contact name

Andy Pang

E-mail(s)

andypang@sickkids.ca

Organization name

The Centre for Applied Genomics

Lab

Stephen W. Scherer

Street address

MaRS Centre - East Tower, 101 College Street, Room 14-701

City

Toronto

State/province

ZIP/Postal code

M5G 1L7

Country

Canada

Platforms (87)

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GPL6801	[GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
GPL6983	Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C)
GPL9857	Agilent/SNU human 24M CGH array, 1 of 24 (Feature Number version)

GPL9859	Agilent/SNU human 24M CGH array, 2 of 24 (Feature Number version)
GPL9874	Agilent/SNU human 24M CGH array, 3 of 24 (Feature Number version)
GPL9875	Agilent/SNU human 24M CGH array, 4 of 24 (Feature Number version)
GPL9876	Agilent/SNU human 24M CGH array, 5 of 24 (Feature Number version)
GPL9877	Agilent/SNU human 24M CGH array, 6 of 24 (Feature Number version)
GPL9878	Agilent/SNU human 24M CGH array, 7 of 24 (Feature Number version)
GPL9879	Agilent/SNU human 24M CGH array, 8 of 24 (Feature Number version)
GPL9880	Agilent/SNU human 24M CGH array, 9 of 24 (Feature Number version)
GPL9881	Agilent/SNU human 24M CGH array, 10 of 24 (Feature Number version)
GPL9882	Agilent/SNU human 24M CGH array, 11 of 24 (Feature Number version)
GPL9883	Agilent/SNU human 24M CGH array, 12 of 24 (Feature Number version)
GPL9884	Agilent/SNU human 24M CGH array, 13 of 24 (Feature Number version)
GPL9885	Agilent/SNU human 24M CGH array, 14 of 24 (Feature Number version)
GPL9888	Agilent/SNU human 24M CGH array, 15 of 24 (Feature Number version)
GPL9889	Agilent/SNU human 24M CGH array, 16 of 24 (Feature Number version)
GPL9890	Agilent/SNU human 24M CGH array, 17 of 24 (Feature Number version)
GPL9891	Agilent/SNU human 24M CGH array, 18 of 24 (Feature Number version)
GPL9892	Agilent/SNU human 24M CGH array, 19 of 24 (Feature Number version)
GPL9894	Agilent/SNU human 24M CGH array, 20 of 24 (Feature Number version)
GPL9895	Agilent/SNU human 24M CGH array, 21 of 24 (Feature Number version)
GPL9896	Agilent/SNU human 24M CGH array, 22 of 24 (Feature Number version)
GPL9897	Agilent/SNU human 24M CGH array, 23 of 24 (Feature Number version)
GPL9898	Agilent/SNU human 24M CGH array, 24 of 24 (Feature Number version)
GPL16619	Agilent-015539 human custom 244k CGH array
GPL16620	NimbleGen human 42M CGH array, 1 of 60 [2007-05-18_HG18_Sanger_CGH_01]
GPL16621	NimbleGen human 42M CGH array, 2 of 60 [2007-05-18_HG18_Sanger_CGH_02]
GPL16622	NimbleGen human 42M CGH array, 3 of 60 [2007-05-18_HG18_Sanger_CGH_03]
GPL16623	NimbleGen human 42M CGH array, 4 of 60 [2007-05-18_HG18_Sanger_CGH_04]
GPL16624	NimbleGen human 42M CGH array, 5 of 60 [2007-05-18_HG18_Sanger_CGH_05]
GPL16625	NimbleGen human 42M CGH array, 6 of 60 [2007-05-18_HG18_Sanger_CGH_06]
GPL16626	NimbleGen human 42M CGH array, 7 of 60 [2007-05-18_HG18_Sanger_CGH_07]
GPL16627	NimbleGen human 42M CGH array, 8 of 60 [2007-05-18_HG18_Sanger_CGH_08]
GPL16628	NimbleGen human 42M CGH array, 9 of 60 [2007-05-18_HG18_Sanger_CGH_09]
GPL16629	NimbleGen human 42M CGH array, 10 of 60 [2007-05-18_HG18_Sanger_CGH_10]
GPL16630	NimbleGen human 42M CGH array, 11 of 60 [2007-05-18_HG18_Sanger_CGH_11]
GPL16631	NimbleGen human 42M CGH array, 12 of 60 [2007-05-18_HG18_Sanger_CGH_12]
GPL16632	NimbleGen human 42M CGH array, 13 of 60 [2007-05-18_HG18_Sanger_CGH_13]
GPL16633	NimbleGen human 42M CGH array, 14 of 60 [2007-05-18_HG18_Sanger_CGH_14]
GPL16634	NimbleGen human 42M CGH array, 15 of 60 [2007-05-18_HG18_Sanger_CGH_15]
GPL16635	NimbleGen human 42M CGH array, 16 of 60 [2007-05-18_HG18_Sanger_CGH_16]
GPL16636	NimbleGen human 42M CGH array, 17 of 60 [2007-05-18_HG18_Sanger_CGH_17]
GPL16637	NimbleGen human 42M CGH array, 18 of 60 [2007-05-18_HG18_Sanger_CGH_18]
GPL16638	NimbleGen human 42M CGH array, 19 of 60 [2007-05-18_HG18_Sanger_CGH_19]
GPL16639	NimbleGen human 42M CGH array, 20 of 60 [2007-05-18_HG18_Sanger_CGH_20]
GPL16640	NimbleGen human 42M CGH array, 21 of 60 [2007-05-18_HG18_Sanger_CGH_21]
GPL16641	NimbleGen human 42M CGH array, 22 of 60 [2007-05-18_HG18_Sanger_CGH_22]
GPL16642	NimbleGen human 42M CGH array, 23 of 60 [2007-05-18_HG18_Sanger_CGH_23]
GPL16643	NimbleGen human 42M CGH array, 24 of 60 [2007-05-18_HG18_Sanger_CGH_24]
GPL16644	NimbleGen human 42M CGH array, 25 of 60 [2007-05-18_HG18_Sanger_CGH_25]
GPL16645	NimbleGen human 42M CGH array, 26 of 60 [2007-05-18_HG18_Sanger_CGH_26]
GPL16646	NimbleGen human 42M CGH array, 27 of 60 [2007-05-18_HG18_Sanger_CGH_27]
GPL16647	NimbleGen human 42M CGH array, 28 of 60 [2007-05-18_HG18_Sanger_CGH_28]
GPL16648	NimbleGen human 42M CGH array, 29 of 60 [2007-05-18_HG18_Sanger_CGH_29]
GPL16649	NimbleGen human 42M CGH array, 30 of 60 [2007-05-18_HG18_Sanger_CGH_30]
GPL16650	NimbleGen human 42M CGH array, 31 of 60 [2007-05-18_HG18_Sanger_CGH_31]
GPL16651	NimbleGen human 42M CGH array, 32 of 60 [2007-05-18_HG18_Sanger_CGH_32]
GPL16652	NimbleGen human 42M CGH array, 33 of 60 [2007-05-18_HG18_Sanger_CGH_33]
GPL16653	NimbleGen human 42M CGH array, 34 of 60 [2007-05-18_HG18_Sanger_CGH_34]
GPL16654	NimbleGen human 42M CGH array, 35 of 60 [2007-05-18_HG18_Sanger_CGH_35]
GPL16655	NimbleGen human 42M CGH array, 36 of 60 [2007-05-18_HG18_Sanger_CGH_36]
GPL16656	NimbleGen human 42M CGH array, 37 of 60 [2007-05-18_HG18_Sanger_CGH_37]
GPL16657	NimbleGen human 42M CGH array, 38 of 60 [2007-05-18_HG18_Sanger_CGH_38]
GPL16658	NimbleGen human 42M CGH array, 39 of 60 [2007-05-18_HG18_Sanger_CGH_39]
GPL16659	NimbleGen human 42M CGH array, 40 of 60 [2007-05-18_HG18_Sanger_CGH_40]
GPL16660	NimbleGen human 42M CGH array, 41 of 60 [2007-05-18_HG18_Sanger_CGH_41]
GPL16661	NimbleGen human 42M CGH array, 42 of 60 [2007-05-18_HG18_Sanger_CGH_42]
GPL16662	NimbleGen human 42M CGH array, 43 of 60 [2007-05-18_HG18_Sanger_CGH_43]
GPL16663	NimbleGen human 42M CGH array, 44 of 60 [2007-05-18_HG18_Sanger_CGH_44]
GPL16664	NimbleGen human 42M CGH array, 45 of 60 [2007-05-18_HG18_Sanger_CGH_45]
GPL16665	NimbleGen human 42M CGH array, 46 of 60 [2007-05-18_HG18_Sanger_CGH_46]
GPL16666	NimbleGen human 42M CGH array, 47 of 60 [2007-05-18_HG18_Sanger_CGH_47]
GPL16667	NimbleGen human 42M CGH array, 48 of 60 [2007-05-18_HG18_Sanger_CGH_48]
GPL16668	NimbleGen human 42M CGH array, 49 of 60 [2007-05-18_HG18_Sanger_CGH_49]
GPL16669	NimbleGen human 42M CGH array, 50 of 60 [2007-05-18_HG18_Sanger_CGH_50]
GPL16670	NimbleGen human 42M CGH array, 51 of 60 [2007-05-18_HG18_Sanger_CGH_51]
GPL16671	NimbleGen human 42M CGH array, 52 of 60 [2007-05-18_HG18_Sanger_CGH_52]
GPL16672	NimbleGen human 42M CGH array, 53 of 60 [2007-05-18_HG18_Sanger_CGH_53]
GPL16673	NimbleGen human 42M CGH array, 54 of 60 [2007-05-18_HG18_Sanger_CGH_54]
GPL16674	NimbleGen human 42M CGH array, 55 of 60 [2007-05-18_HG18_Sanger_CGH_55]
GPL16675	NimbleGen human 42M CGH array, 56 of 60 [2007-05-18_HG18_Sanger_CGH_56]
GPL16676	NimbleGen human 42M CGH array, 57 of 60 [2007-05-18_HG18_Sanger_CGH_57]
GPL16677	NimbleGen human 42M CGH array, 58 of 60 [2007-05-18_HG18_Sanger_CGH_58]
GPL16678	NimbleGen human 42M CGH array, 59 of 60 [2007-05-18_HG18_Sanger_CGH_59]
GPL16679	NimbleGen human 42M CGH array, 60 of 60 [2007-05-18_HG18_Sanger_CGH_60]

Samples (100)

More...

GSM508411	HuRef lymphoblastoid cell line_Affymetrix
GSM1082299	HuRef lymphoblastoid cell line_Illumina
GSM1082326	Lymphoblastoid NA18500 Cy3_Agilent244K

GSM1082327	Lymphoblastoid NA18500 Cy5_Agilent244K
GSM1082328	Lymphoblastoid NA15510 Cy3_Agilent244K
GSM1082329	Lymphoblastoid NA15510 Cy5_Agilent244K
GSM1082330	Lymphoblastoid JCVI Cy3_Agilent244K
GSM1082331	Lymphoblastoid JCVI Cy5_Agilent244K
GSM1082332	Lymphoblastoid NA19099 Cy3_Agilent244K
GSM1082333	Lymphoblastoid NA19099 Cy5_Agilent244K
GSM1082334	Lymphoblastoid NA18576 Cy3_Agilent244K
GSM1082335	Lymphoblastoid NA18576 Cy5_Agilent244K
GSM1082336	Lymphoblastoid NA12144 Cy3_Agilent244K
GSM1082337	Lymphoblastoid NA12144 Cy5_Agilent244K
GSM1082338	Lymphoblastoid NA18980 Cy3_Agilent244K
GSM1082339	Lymphoblastoid NA18980 Cy5_Agilent244K
GSM1082349	Lymphoblastoid JCVI Cy3, Agilent24M_array 1
GSM1082350	Lymphoblastoid JCVI Cy3, Agilent24M_array 2
GSM1082351	Lymphoblastoid JCVI Cy3, Agilent24M_array 3
GSM1082352	Lymphoblastoid JCVI Cy3, Agilent24M_array 4
GSM1082353	Lymphoblastoid JCVI Cy3, Agilent24M_array 5
GSM1082354	Lymphoblastoid JCVI Cy3, Agilent24M_array 6
GSM1082355	Lymphoblastoid JCVI Cy3, Agilent24M_array 7
GSM1082356	Lymphoblastoid JCVI Cy3, Agilent24M_array 8
GSM1082357	Lymphoblastoid JCVI Cy3, Agilent24M_array 9
GSM1082358	Lymphoblastoid JCVI Cy3, Agilent24M_array 10
GSM1082359	Lymphoblastoid JCVI Cy3, Agilent24M_array 11
GSM1082360	Lymphoblastoid JCVI Cy3, Agilent24M_array 12
GSM1082361	Lymphoblastoid JCVI Cy3, Agilent24M_array 13
GSM1082362	Lymphoblastoid JCVI Cy3, Agilent24M_array 14
GSM1082363	Lymphoblastoid JCVI Cy3, Agilent24M_array 15
GSM1082364	Lymphoblastoid JCVI Cy3, Agilent24M_array 16
GSM1082365	Lymphoblastoid JCVI Cy3, Agilent24M_array 17
GSM1082366	Lymphoblastoid JCVI Cy3, Agilent24M_array 18
GSM1082367	Lymphoblastoid JCVI Cy3, Agilent24M_array 19
GSM1082368	Lymphoblastoid JCVI Cy3, Agilent24M_array 20
GSM1082369	Lymphoblastoid JCVI Cy3, Agilent24M_array 21
GSM1082370	Lymphoblastoid JCVI Cy3, Agilent24M_array 22
GSM1082371	Lymphoblastoid JCVI Cy3, Agilent24M_array 23
GSM1082372	Lymphoblastoid JCVI Cy3, Agilent24M_array 24
GSM1082373	HuRef lymphoblastoid cell line, NimbleGen42M_01
GSM1082374	HuRef lymphoblastoid cell line, NimbleGen42M_02
GSM1082375	HuRef lymphoblastoid cell line, NimbleGen42M_03
GSM1082376	HuRef lymphoblastoid cell line, NimbleGen42M_04
GSM1082377	HuRef lymphoblastoid cell line, NimbleGen42M_05
GSM1082378	HuRef lymphoblastoid cell line, NimbleGen42M_06
GSM1082379	HuRef lymphoblastoid cell line, NimbleGen42M_07
GSM1082380	HuRef lymphoblastoid cell line, NimbleGen42M_08
GSM1082381	HuRef lymphoblastoid cell line, NimbleGen42M_09
GSM1082382	HuRef lymphoblastoid cell line, NimbleGen42M_10
GSM1082383	HuRef lymphoblastoid cell line, NimbleGen42M_11
GSM1082384	HuRef lymphoblastoid cell line, NimbleGen42M_12
GSM1082385	HuRef lymphoblastoid cell line, NimbleGen42M_13
GSM1082386	HuRef lymphoblastoid cell line, NimbleGen42M_14
GSM1082387	HuRef lymphoblastoid cell line, NimbleGen42M_15
GSM1082388	HuRef lymphoblastoid cell line, NimbleGen42M_16
GSM1082389	HuRef lymphoblastoid cell line, NimbleGen42M_17
GSM1082390	HuRef lymphoblastoid cell line, NimbleGen42M_18
GSM1082391	HuRef lymphoblastoid cell line, NimbleGen42M_19
GSM1082392	HuRef lymphoblastoid cell line, NimbleGen42M_20
GSM1082393	HuRef lymphoblastoid cell line, NimbleGen42M_21
GSM1082394	HuRef lymphoblastoid cell line, NimbleGen42M_22
GSM1082395	HuRef lymphoblastoid cell line, NimbleGen42M_23
GSM1082396	HuRef lymphoblastoid cell line, NimbleGen42M_24
GSM1082397	HuRef lymphoblastoid cell line, NimbleGen42M_25
GSM1082398	HuRef lymphoblastoid cell line, NimbleGen42M_26
GSM1082399	HuRef lymphoblastoid cell line, NimbleGen42M_27
GSM1082400	HuRef lymphoblastoid cell line, NimbleGen42M_28
GSM1082401	HuRef lymphoblastoid cell line, NimbleGen42M_29
GSM1082402	HuRef lymphoblastoid cell line, NimbleGen42M_30
GSM1082403	HuRef lymphoblastoid cell line, NimbleGen42M_31
GSM1082404	HuRef lymphoblastoid cell line, NimbleGen42M_32
GSM1082405	HuRef lymphoblastoid cell line, NimbleGen42M_33
GSM1082406	HuRef lymphoblastoid cell line, NimbleGen42M_34
GSM1082407	HuRef lymphoblastoid cell line, NimbleGen42M_35
GSM1082408	HuRef lymphoblastoid cell line, NimbleGen42M_36
GSM1082409	HuRef lymphoblastoid cell line, NimbleGen42M_37
GSM1082410	HuRef lymphoblastoid cell line, NimbleGen42M_38
GSM1082411	HuRef lymphoblastoid cell line, NimbleGen42M_39
GSM1082412	HuRef lymphoblastoid cell line, NimbleGen42M_40
GSM1082413	HuRef lymphoblastoid cell line, NimbleGen42M_41
GSM1082414	HuRef lymphoblastoid cell line, NimbleGen42M_42
GSM1082415	HuRef lymphoblastoid cell line, NimbleGen42M_43
GSM1082416	HuRef lymphoblastoid cell line, NimbleGen42M_44
GSM1082417	HuRef lymphoblastoid cell line, NimbleGen42M_45
GSM1082418	HuRef lymphoblastoid cell line, NimbleGen42M_46
GSM1082419	HuRef lymphoblastoid cell line, NimbleGen42M_47
GSM1082420	HuRef lymphoblastoid cell line, NimbleGen42M_48
GSM1082421	HuRef lymphoblastoid cell line, NimbleGen42M_49
GSM1082422	HuRef lymphoblastoid cell line, NimbleGen42M_50
GSM1082423	HuRef lymphoblastoid cell line, NimbleGen42M_51
GSM1082424	HuRef lymphoblastoid cell line, NimbleGen42M_52
GSM1082425	HuRef lymphoblastoid cell line, NimbleGen42M_53
GSM1082426	HuRef lymphoblastoid cell line, NimbleGen42M_54
GSM1082427	HuRef lymphoblastoid cell line, NimbleGen42M_55
GSM1082428	HuRef lymphoblastoid cell line, NimbleGen42M_56
GSM1082429	HuRef lymphoblastoid cell line, NimbleGen42M_57
GSM1082430	HuRef lymphoblastoid cell line, NimbleGen42M_58
GSM1082431	HuRef lymphoblastoid cell line, NimbleGen42M_59
GSM1082432	HuRef lymphoblastoid cell line, NimbleGen42M_60

This SuperSeries is composed of the following SubSeries:

More...

GSE20275	Affymetrix SNP and CNV data for the HuRef individual
GSE20284	Illumina SNP and CNV data for the HuRef individual
GSE20287	Agilent custom 244K array CGH data for the HuRef individual

Relations

BioProject

PRJNA189283

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE20290_RAW.tar	7.0 Gb	(http)(custom)	TAR (of CEL, CHP, GFF, PAIR, TXT)