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GEO accession:
Series GSE203328
Query DataSets for GSE203328
Status
Public on Oct 09, 2022
Title
DNA polymerase epsilon interacts with SUVH2/9 to mediate meiotic DSB associated gene silencing beyond DNA methylation in Arabidopsis
Organism
Arabidopsis thaliana
Experiment type
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
36191225
Submission date
May 18, 2022
Last update date
Oct 10, 2022
Contact name
Chenjiang You
E-mail(s)
chenjiang.you@ucr.edu, youchenjiang2003@hotmail.com
Organization name
Fudan University
Street address
2005 Songhu Rd
City
Shanghai
State/province
Shanghai
ZIP/Postal code
200438
Country
China
Platforms (1)
GPL26208
Illumina NovaSeq 6000 (Arabidopsis thaliana)
Samples (46)
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GSM6165470
BiSulfite-seq WT_meiocyte_1
GSM6165471
BiSulfite-seq WT_meiocyte_2
GSM6165472
BiSulfite-seq pol2a-1_meiocyte_1
GSM6165473
BiSulfite-seq pol2a-1_meiocyte_2
GSM6165474
BiSulfite-seq suvh2suvh9_meiocyte_1
GSM6165475
BiSulfite-seq suvh2suvh9_meiocyte_2
GSM6165476
BiSulfite-seq WT_sdlg_1
GSM6165477
BiSulfite-seq WT_sdlg_2
GSM6165478
BiSulfite-seq pol2a-1_sdlg_1
GSM6165479
BiSulfite-seq pol2a-1_sdlg_2
GSM6165480
BiSulfite-seq suvh2suvh9_sdlg_1
GSM6165481
BiSulfite-seq suvh2suvh9_sdlg_2
GSM6165482
BiSulfite-seq pol2a-1suvh2suvh9_sdlg_1
GSM6165483
BiSulfite-seq pol2a-1suvh2suvh9_sdlg_2
GSM6166308
RNA-seq WT_meiocyte_1
GSM6166309
RNA-seq WT_meiocyte_2
GSM6166310
RNA-seq pol2a-1_meiocyte_1
GSM6166311
RNA-seq pol2a-1_meiocyte_2
GSM6166312
RNA-seq pol2a-2_meiocyte_1
GSM6166313
RNA-seq pol2a-2_meiocyte_2
GSM6166314
RNA-seq suvhsuvh9_meiocyte_1
GSM6166315
RNA-seq suvhsuvh9_meiocyte_2
GSM6166316
RNA-seq pol2a-suvhsuvh9_meiocyte_1
GSM6166317
RNA-seq pol2a-suvhsuvh9_meiocyte_2
GSM6166318
RNA-seq WT_sdlg_1
GSM6166319
RNA-seq WT_sdlg_2
GSM6166320
RNA-seq pol2a-1_sdlg_1
GSM6166321
RNA-seq pol2a-1_sdlg_2
GSM6166322
RNA-seq pol2a-2_sdlg_1
GSM6166323
RNA-seq pol2a-2_sdlg_2
GSM6166324
RNA-seq suvhsuvh9_sdlg_1
GSM6166325
RNA-seq suvhsuvh9_sdlg_2
GSM6166326
RNA-seq pol2a-suvhsuvh9_sdlg_1
GSM6166327
RNA-seq pol2a-suvhsuvh9_sdlg_2
GSM6166496
smRNA WT_meiocyte_1
GSM6166497
smRNA WT_meiocyte_2
GSM6166498
smRNA pol2a_1_meiocyte_1
GSM6166499
smRNA pol2a_1_meiocyte_2
GSM6166500
smRNA suvh2suvh9_meiocyte_1
GSM6166501
smRNA suvh2suvh9_meiocyte_2
GSM6166502
smRNA WT_sdlg_1
GSM6166503
smRNA WT_sdlg_2
GSM6166504
smRNA pol2a_1_sdlg_1
GSM6166505
smRNA pol2a_1_sdlg_2
GSM6166506
smRNA suvh2suvh9_sdlg_1
GSM6166507
smRNA suvh2suvh9_sdlg_2
This SuperSeries is composed of the following SubSeries:
GSE203263
DNA polymerase epsilon interacts with SUVH2/9 to mediate meiotic DSB associated gene silencing beyond DNA methylation in Arabidopsis [BiSulfite-seq]
GSE203309
DNA polymerase epsilon interacts with SUVH2/9 to mediate meiotic DSB associated gene silencing beyond DNA methylation in Arabidopsis [RNA-seq]
GSE203325
DNA polymerase epsilon interacts with SUVH2/9 to mediate meiotic DSB associated gene silencing beyond DNA methylation in Arabidopsis [miRNA-seq]
Relations
BioProject
PRJNA839425
Download family
Format
SOFT formatted family file(s)
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MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE203328_RAW.tar
2.7 Gb
(http)
(custom)
TAR (of TXT)
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