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Series GSE203552 Query DataSets for GSE203552
Status Public on Aug 23, 2022
Title Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Single-cell transcriptomic atlas of leukocytes of biopsy fluid (n = 2), blood (n = 2) and CSF (n = 1), and spatial transcriptomics of biopsy tissue (n = 4) from primary CNS B cell lymphoma patients.
 
Overall design Single-cell RNA and BCR sequencing of paired biopsy fluid and blood and spatial transcriptomics in primary CNS lymphoma.
 
Contributor(s) Heming M, Lu I, Grauer O, Meyer zu Hörste G
Citation(s) 36153593
Submission date May 22, 2022
Last update date Sep 25, 2022
Contact name Michael Heming
Organization name University Hospital Muenster
Department Department of Neurology with Institute of Translational Neurology
Street address Albert-Schweitzer-Campus 1, Bldg A1
City Muenster
ZIP/Postal code 48149
Country Germany
 
Platforms (2)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
GPL30173 NextSeq 2000 (Homo sapiens)
Samples (22)
GSM6176194 single-cell BCR seq data of biopsy material from PCNSL patient 1 part 1
GSM6176195 single-cell RNA seq data of biopsy material from PCNSL patient 1 part 1
GSM6176196 single-cell BCR seq data of biopsy material from PCNSL patient 1 part 2
Relations
BioProject PRJNA841365

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE203552_RAW.tar 247.6 Mb (http)(custom) TAR (of CSV, H5, JSON, PNG)
GSE203552_annotation_cluster.csv.gz 401.8 Kb (ftp)(http) CSV
GSE203552_annotation_cluster_bc.csv.gz 411.4 Kb (ftp)(http) CSV
GSE203552_annotation_sample.csv.gz 372.0 Kb (ftp)(http) CSV
Raw data are available in SRA
Processed data provided as supplementary file

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