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| Status |
Public on Oct 10, 2022 |
| Title |
Expression data from MAT1 lncRNA knockdown UM cells (OCM1a) |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
LncRNAs are key regulators of chromatin structure, however the mechanism of RNA-chromatin interactions are largely unclarified. Here we performed Chromatin Isolation by RNA Purification (ChIRP), using tiling oligonucleotides retrieve MAT1 lncRNA and bound DNA sequences are examined by high-throughout sequencing. ChIRP-seq enables the study of RNA regulation of chromatin and gene expression.
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| Overall design |
Chromatin Isolation by RNA Purification (ChIRP) (ChIRP-seq) for MAT1 and lacZ in OCM1a cells.
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| Contributor(s) |
Zhang H, Pan H, Fan X, Zhang H |
| Citation missing |
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| Submission date |
Sep 11, 2022 |
| Last update date |
Oct 12, 2022 |
| Contact name |
hui pan |
| E-mail(s) |
phjd@sjtu.edu.cn
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| Organization name |
Ninth People’s Hospital, Shanghai JiaoTong University School of Medicine
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| Department |
Department of Ophthalmology
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| Street address |
Zhizaoju Road No.639, Huangpu District
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| City |
Shanghai |
| ZIP/Postal code |
200000 |
| Country |
China |
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| Platforms (1) |
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| Samples (3) |
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| Relations |
| BioProject |
PRJNA879194 |
