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Series GSE21404 Query DataSets for GSE21404
Status Public on May 20, 2010
Title Opposing roles of polycomb repressive complexes in hematopoietic stem and progenitor cells
Organism Mus musculus
Experiment type Expression profiling by array
Summary Polycomb group (PcG) proteins are transcriptional repressors with a central role in the establishment and maintenance of gene expression patterns during development. We have investigated the role of Polycomb Repressive Complexes (PRCs) in hematopoietic stem cells (HSCs) and progenitor populations. We show that mice with loss of function mutations in PRC2 components display enhanced HSC/progenitor population activity, whereas mutations that disrupt PRC1 or PhoRC are associated with HSC/progenitor cell defects. Since the hierarchical model of PRC action would predict synergistic effects of PRC1 and PRC2 mutation, these opposing effects suggest this model does not hold true in HSC/progenitor cells. To investigate the molecular targets of each complex in HSC/progenitor cells, we measured genome-wide expression changes associated with PRC-deficiency, and identified transcriptional networks that are differentially regulated by PRC1 and PRC2. These studies provide new insights into the mechanistic interplay between distinct PRCs and have important implications for approaching PcG proteins as therapeutic targets.
 
Overall design Total RNA obtained from foetal liver LSK cells from mouse embryos with genes from different polycomb repressive complexes mutated or knocked-out was compared with wild-type samples.
 
Contributor(s) Blewitt ME
Citation(s) 20445021
Submission date Apr 20, 2010
Last update date Jan 16, 2019
Contact name Matthew Ritchie
E-mail(s) mritchie@wehi.edu.au
Organization name The Walter and Eliza Hall Institute of Medical Research
Department Epigenetics and Development Division
Street address 1G Royal Parade
City Parkville
State/province Victoria
ZIP/Postal code 3052
Country Australia
 
Platforms (1)
GPL6887 Illumina MouseWG-6 v2.0 expression beadchip
Samples (18)
GSM534836 Yy1het rep1
GSM534837 Plt88 rep1
GSM534838 Wt rep1
Relations
BioProject PRJNA126407

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE21404_RAW.tar 15.8 Mb (http)(custom) TAR
GSE21404_non-normalized.txt.gz 5.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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