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Series GSE215450 Query DataSets for GSE215450
Status Public on Oct 26, 2022
Title Circulating microRNAs in relapsing MS patients treated with dimethyl fumarate in the phase 4 TREMEND trial
Organism Homo sapiens
Experiment type Non-coding RNA profiling by array
Summary Dimethyl fumarate (DMF) is an oral drug approved for relapsing multiple sclerosis (MS) that leads to reduction of neurofilament light (NFL). This may be related to dynamics and persistence of microRNA signatures in the peripheral blood of treatment-naïve MS patients before and after dimethyl fumarate (DMF) at different time points. 210 blood samples were collected from 51 treatment-naïve patients at baseline (BL) and after 1-3, 4-7, 9-15 and 21-27 months of DMF and from 22 controls from the phase IV TREMEND trial. Using microarray, 1,085 miRNAs were two-folds above the background and compared versus NFL. Altered miRNA profiles peaked after 4-7 months. MiR-16-5p and miR-4306, involved in the NF-kB-pathway, were upregulated in low NFL samples, while miR-940 and miR-4665-3p were upregulated in high NFL samples. NFL and miRNA correlations were strongest after 4-7 months DMF. In four patients with blood samples taken at all 5 time points, time-series analysis found miR-146a-5p, the inhibitor of the NF-kB-pathway, increased 1-3 months after treatment. DMF induces dynamic changes in composite miRNA profiles 4-7 months after initiation, several involved in the NF-kB-pathway. Upregulation of miR-16-5p and miR-4306 in low-NFL, while miR-940 and miR-4665-3p in high-NFL samples may indicate a response to DMF treatment.
 
Overall design 210 blood samples from the TREMEND (Tecfidera in Relapsing-Remitting Multiple Sclerosis: Endothelial Dysfunction) phase IV clinical trial was divided into six different groups. Controls: blood 22 healthy controls. Baseline: 51 RRMS patients before Tecfidera (DMF) treatment. Early: 45 RRMS patients 1-3 month after DMF treatment. Intermediate: 20 RRMS patients 4-7 month after DMF treatment. 1-year: 49 RRMS patient after 1-year with DMF treatment. Long term: 23 RRMS patients 2 years after start of treatment with DMF. MicroRNA detections from RNA extracts of the whole blood samples were obtained with miRNA Microarray System.
 
Contributor(s) Elkjaer ML, Lohse RM, Burton M, Mendoza JP, Thomassen M, Sejbaek T, Illes Z
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Submission date Oct 13, 2022
Last update date Oct 29, 2022
Contact name Laura Catalini
E-mail(s) laura.catalini@studenti.unicam.it
Organization name Odense University Hospital
Department Fertility clinic
Street address Kløvervænget 23
City Odense C
State/province Syddanmark
ZIP/Postal code DK-5000
Country Denmark
 
Platforms (1)
GPL25134 Agilent-070156 Human_miRNA_V21.0_Microarray 046064 (miRNA ID version)
Samples (211)
GSM6668434 Control 1
GSM6668435 Control 10
GSM6668436 Control 11
Relations
BioProject PRJNA892969

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE215450_RAW.tar 574.6 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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