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Series GSE217131 Query DataSets for GSE217131
Status Public on Apr 26, 2024
Title TNF-NFkB-p53 axis restricts in vivo survival of hPSC-derived dopamine neuron (CRISPR screen)
Organism Homo sapiens
Experiment type Other
Summary First-in-human clinical trials illustrate the feasibility and translational potential of human pluripotent stem cell (hPSC)-based cell therapy in Parkinson’s disease (PD). However, a major unresolved challenge is the extensive cell death following transplantation with <10% of grafted dopamine neurons surviving. Here, we performed a pooled CRISPR/Cas9 screen to enhance survival of postmitotic dopamine neurons in vivo. We identified TP53-mediated apoptotic cell death as major contributor to dopamine neuron loss and uncovered a causal link of TNFa-NFκB signaling in limiting cell survival. A surface marker screen enabled the purification of midbrain dopamine neurons obviating the need for genetic reporters. Combining cell sorting with adalimumab pretreatment, a clinically approved TNFa inhibitor, enabled efficient engraftment of postmitotic dopamine neurons leading to extensive re-innervation and functional recovery in a preclinical PD mouse model. Thus, transient TNFa inhibition may present a clinically relevant strategy to enhance survival of human PSC-derived lineages in PD and beyond.
 
Overall design CRISPR screen study of TP53 WT dopamine neurons, in vitro and in vivo
 
Contributor(s) Cho H, Chaudhry F, Betel D, Studer L
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Submission date Nov 02, 2022
Last update date Apr 26, 2024
Contact name Hyein Sophia Cho
E-mail(s) choh@mskcc.org
Organization name Memorial Sloan Kettering Cancer Center
Department Developmental Biology
Street address 430 E 67th St
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (8)
GSM6705502 Large screen on Day 16 Dox-
GSM6705503 Large screen on Day 25 Dox-
GSM6705504 Large screen on Day 25 Dox+
This SubSeries is part of SuperSeries:
GSE216365 TNF-NFkB-p53 axis restricts in vivo survival of hPSC-derived dopamine neuron
Relations
BioProject PRJNA896993

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Supplementary file Size Download File type/resource
GSE217131_220929_large_pool_gRNA_raw_and_processed.xlsx 258.9 Kb (ftp)(http) XLSX
GSE217131_220929_small_pool_gRNA_raw_and_processed_figures.xlsx 37.9 Kb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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