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| Status |
Public on Apr 05, 2024 |
| Title |
Gene expression profiling of colon biopsies from ulcerative colitis patients and healthy volunteers |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Genome-wide transcriptional profiling of colonic biopsies endoscopically acquired from the rectosigmoid area of healthy donors and UC patients.
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| Overall design |
Biopsies were sampled from 6 healthy donors who lacked completely mucosal inflammation both histologically and endoscopically and from 16 UC patients with evidence of active disease.
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| Contributor(s) |
Digby-Bell J, Cozzetto D, Powell N |
| Citation missing |
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| Submission date |
Feb 07, 2023 |
| Last update date |
Apr 05, 2024 |
| Contact name |
Nick Powell |
| E-mail(s) |
npowell@ic.ac.uk
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| Organization name |
Imperial College London
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| Department |
Department of Metabolism, Digestion and Reproduction
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| Street address |
Du Cane Road
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| City |
London |
| ZIP/Postal code |
W12 0NN |
| Country |
United Kingdom |
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| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
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| Samples (22)
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| GSM7031379 |
healthy colon biopsy, rep 1 |
| GSM7031380 |
healthy colon biopsy, rep 2 |
| GSM7031381 |
healthy colon biopsy, rep 3 |
| GSM7031382 |
ulcerative colitis colon biopsy, rep 4 |
| GSM7031383 |
ulcerative colitis colon biopsy, rep 5 |
| GSM7031384 |
ulcerative colitis colon biopsy, rep 6 |
| GSM7031385 |
ulcerative colitis colon biopsy, rep 7 |
| GSM7031386 |
ulcerative colitis colon biopsy, rep 8 |
| GSM7031387 |
ulcerative colitis colon biopsy, rep 9 |
| GSM7031388 |
healthy colon biopsy, rep 4 |
| GSM7031389 |
healthy colon biopsy, rep 5 |
| GSM7031390 |
healthy colon biopsy, rep 6 |
| GSM7031391 |
ulcerative colitis colon biopsy, rep 10 |
| GSM7031392 |
ulcerative colitis colon biopsy, rep 11 |
| GSM7031393 |
ulcerative colitis colon biopsy, rep 12 |
| GSM7031394 |
ulcerative colitis colon biopsy, rep 13 |
| GSM7031395 |
ulcerative colitis colon biopsy, rep 14 |
| GSM7031396 |
ulcerative colitis colon biopsy, rep 15 |
| GSM7031397 |
ulcerative colitis colon biopsy, rep 16 |
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| Relations |
| BioProject |
PRJNA932428 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE224758_read_counts.csv.gz |
1.0 Mb |
(ftp)(http) |
CSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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