|
| Status |
Public on Feb 09, 2024 |
| Title |
Defined cellular reprogramming of androgen receptor-active prostate cancer to neuroendocrine prostate cancer |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Feb 10, 2023 |
| Last update date |
Feb 09, 2024 |
| Contact name |
John K Lee |
| E-mail(s) |
jklee5@fredhutch.org
|
| Phone |
206-667-6819
|
| Organization name |
Fred Hutch Cancer Research
|
| Department |
Human Biology Division
|
| Lab |
Lee lab
|
| Street address |
1100 Fairview Ave N, E2-112
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
| GPL30173 |
NextSeq 2000 (Homo sapiens) |
|
| Samples (172)
|
| GSM7036930 |
4_H3K4me3_r1_D2PRNBSA |
| GSM7036931 |
5_H3K4me3_r2_D2PRNBSA |
| GSM7036932 |
6_H3K4me3_r3_D2PRNBSA |
| GSM7036933 |
7_H3K4me1_r1_D2PRNBSA |
| GSM7036934 |
8_H3K4me1_r2_D2PRNBSA |
| GSM7036935 |
9_H3K4me1_r3_D2PRNBSA |
| GSM7036936 |
10_H3K27ac_r1_D2PRNBSA |
| GSM7036937 |
11_H3K27ac_r2_D2PRNBSA |
| GSM7036938 |
12_H3K27ac_r3_D2PRNBSA |
| GSM7036939 |
13_IgGr_1_D2PRNBSA |
| GSM7036940 |
14_IgGr_r2_D2PRNBSA |
| GSM7036941 |
15_IgGr_r3_D2PRNBSA |
| GSM7036942 |
16_ASCL1_r1_D3PRNBSA |
| GSM7036943 |
17_ASCL1_r2_D3PRNBSA |
| GSM7036944 |
18_ASCL1_r3_D3PRNBSA |
| GSM7036945 |
19_H3K4me3_r1_D3PRNBSA |
| GSM7036946 |
20_H3K4me3_r2_D3PRNBSA |
| GSM7036947 |
21_H3K4me3_r3_D3PRNBSA |
| GSM7036948 |
22_H3K4me1_r1_D3PRNBSA |
| GSM7036949 |
23_H3K4me1_r2_D3PRNBSA |
| GSM7036950 |
24_H3K4me1_r3_D3PRNBSA |
| GSM7036951 |
25_H3K27ac_r1_D3PRNBSA |
| GSM7036952 |
26_H3K27ac_r2_D3PRNBSA |
| GSM7036953 |
27_H3K27ac_r3_D3PRNBSA |
| GSM7036954 |
28_IgGr_1_D3PRNBSA |
| GSM7036955 |
29_IgGr_r2_D3PRNBSA |
| GSM7036956 |
30_IgGr_r3_D3PRNBSA |
| GSM7036957 |
31_ASCL1_r1_D4PRNBSA |
| GSM7036958 |
32_ASCL1_r2_D4PRNBSA |
| GSM7036959 |
33_ASCL1_r3_D4PRNBSA |
| GSM7036960 |
34_H3K4me3_r1_D4PRNBSA |
| GSM7036961 |
35_H3K4me3_r2_D4PRNBSA |
| GSM7036962 |
36_H3K4me3_r3_D4PRNBSA |
| GSM7036963 |
37_H3K4me1_r1_D4PRNBSA |
| GSM7036964 |
38_H3K4me1_r2_D4PRNBSA |
| GSM7036965 |
39_H3K4me1_r3_D4PRNBSA |
| GSM7036966 |
40_H3K27ac_r1_D4PRNBSA |
| GSM7036967 |
41_H3K27ac_r2_D4PRNBSA |
| GSM7036968 |
42_H3K27ac_r3_D4PRNBSA |
| GSM7036969 |
43_IgGr_1_D4PRNBSA |
| GSM7036970 |
44_IgGr_r2_D4PRNBSA |
| GSM7036971 |
45_IgGr_r3_D4PRNBSA |
| GSM7036972 |
46_ASCL1_r1_D5PRNBSA |
| GSM7036973 |
47_ASCL1_r2_D5PRNBSA |
| GSM7036974 |
48_ASCL1_r3_D5PRNBSA |
| GSM7036975 |
49_H3K4me3_r1_D5PRNBSA |
| GSM7036976 |
50_H3K4me3_r2_D5PRNBSA |
| GSM7036977 |
51_H3K4me3_r3_D5PRNBSA |
| GSM7036978 |
52_H3K4me1_r1_D5PRNBSA |
| GSM7036979 |
53_H3K4me1_r2_D5PRNBSA |
| GSM7036980 |
54_H3K4me1_r3_D5PRNBSA |
| GSM7036981 |
55_H3K27ac_r1_D5PRNBSA |
| GSM7036982 |
56_H3K27ac_r2_D5PRNBSA |
| GSM7036983 |
57_H3K27ac_r3_D5PRNBSA |
| GSM7036984 |
58_IgGr_1_D5PRNBSA |
| GSM7036985 |
59_IgGr_r2_D5PRNBSA |
| GSM7036986 |
60_IgGr_r3_D5PRNBSA |
| GSM7036987 |
61_ASCL1_r1_D8PRNBSA |
| GSM7036988 |
62_ASCL1_r2_D8PRNBSA |
| GSM7036989 |
63_ASCL1_r3_D8PRNBSA |
| GSM7036990 |
64_H3K4me3_r1_D8PRNBSA |
| GSM7036991 |
65_H3K4me3_r2_D8PRNBSA |
| GSM7036992 |
66_H3K4me3_r3_D8PRNBSA |
| GSM7036993 |
67_H3K4me1_r1_D8PRNBSA |
| GSM7036994 |
68_H3K4me1_r2_D8PRNBSA |
| GSM7036995 |
69_H3K4me1_r3_D8PRNBSA |
| GSM7036996 |
70_H3K27ac_r1_D8PRNBSA |
| GSM7036997 |
71_H3K27ac_r2_D8PRNBSA |
| GSM7036998 |
72_H3K27ac_r3_D8PRNBSA |
| GSM7036999 |
73_IgGr_1_D8PRNBSA |
| GSM7037000 |
74_IgGr_r2_D8PRNBSA |
| GSM7037001 |
75_IgGr_r3_D8PRNBSA |
| GSM7037002 |
76_ASCL1_r1_D14PRNBSA |
| GSM7037003 |
77_ASCL1_r2_D14PRNBSA |
| GSM7037004 |
78_ASCL1_r3_D14PRNBSA |
| GSM7037005 |
79_H3K4me3_r1_D14PRNBSA |
| GSM7037006 |
80_H3K4me3_r2_D14PRNBSA |
| GSM7037007 |
81_H3K4me3_r3_D14PRNBSA |
| GSM7037008 |
82_H3K4me1_r1_D14PRNBSA |
| GSM7037009 |
83_H3K4me1_r2_D14PRNBSA |
| GSM7037010 |
84_H3K4me1_r3_D14PRNBSA |
| GSM7037011 |
85_H3K27ac_r1_D14PRNBSA |
| GSM7037012 |
86_H3K27ac_r2_D14PRNBSA |
| GSM7037013 |
87_H3K27ac_r3_D14PRNBSA |
| GSM7037014 |
88_IgGr_1_D14PRNBSA |
| GSM7037015 |
89_IgGr_r2_D14PRNBSA |
| GSM7037016 |
90_IgGr_r3_D14PRNBSA |
| GSM7037017 |
91_ASCL1_r4_D5PRNBSA |
| GSM7037018 |
92_ASCL1_r4_D14PRNBSA |
| GSM7037093 |
PRNB_1 |
| GSM7037094 |
PRNB_SRRM4_1 |
| GSM7037095 |
PRNB_SRRM4_NEUROD1_1 |
| GSM7037096 |
PRNB_SRRM4_ASCL1_1 |
| GSM7037097 |
PRNB_NEUROD1_1 |
| GSM7037098 |
PRNB_ASCL1_1 |
| GSM7037099 |
GFP_1 |
| GSM7037100 |
PRNB_SRRM4_2 |
| GSM7037101 |
PRNB_2 |
| GSM7037102 |
PRNB_SRRM4_NEUROD1_2 |
| GSM7037103 |
PRNB_SRRM4_ASCL1_2 |
| GSM7037104 |
PRNB_NEUROD1_2 |
| GSM7037105 |
PRNB_ASCL1_2 |
| GSM7037106 |
GFP_2 |
| GSM7037107 |
PRNB_3 |
| GSM7037108 |
PRNB_SRRM4_3 |
| GSM7037109 |
PRNB_SRRM4_NEUROD1_3 |
| GSM7037110 |
PRNB_SRRM4_ASCL1_3 |
| GSM7037111 |
PRNB_NEUROD1_3 |
| GSM7037112 |
PRNB_ASCL1_3 |
| GSM7037113 |
GFP_3 |
| GSM7037114 |
PRNB_4 |
| GSM7037115 |
PRNB_SRRM4_4 |
| GSM7037116 |
PRNB_SRRM4_NEUROD1_4 |
| GSM7037117 |
PRNB_SRRM4_ASCL1_4 |
| GSM7037118 |
PRNB_NEUROD1_4 |
| GSM7037119 |
PRNB_ASCL1_4 |
| GSM7037120 |
GFP_4 |
| GSM7037139 |
D2_PRNB_SRRM4_R1 |
| GSM7037140 |
D2_PRNB_SRRM4_R2 |
| GSM7037141 |
D2_PRNB_SRRM4_NEUROD1_R1 |
| GSM7037142 |
D2_PRNB_SRRM4_NEUROD1_R2 |
| GSM7037143 |
D2_PRNB_SRRM4_ASCL1_R1 |
| GSM7037144 |
D2_PRNB_SRRM4_ASCL1_R2 |
| GSM7037145 |
D3_PRNB_SRRM4_R1 |
| GSM7037146 |
D3_PRNB_SRRM4_R2 |
| GSM7037147 |
D3_PRNB_SRRM4_NEUROD1_R1 |
| GSM7037148 |
D3_PRNB_SRRM4_NEUROD1_R2 |
| GSM7037149 |
D3_PRNB_SRRM4_ASCL1_R1 |
| GSM7037150 |
D3_PRNB_SRRM4_ASCL1_R2 |
| GSM7037152 |
D4_PRNB_SRRM4_R1 |
| GSM7037154 |
D4_PRNB_SRRM4_R2 |
| GSM7037156 |
D4_PRNB_SRRM4_NEUROD1_R1 |
| GSM7037158 |
D4_PRNB_SRRM4_NEUROD1_R2 |
| GSM7037159 |
D4_PRNB_SRRM4_ASCL1_R1 |
| GSM7037160 |
D4_PRNB_SRRM4_ASCL1_R2 |
| GSM7037161 |
D5_PRNB_SRRM4_R1 |
| GSM7037162 |
D5_PRNB_SRRM4_R2 |
| GSM7037163 |
D5_PRNB_SRRM4_NEUROD1_R1 |
| GSM7037164 |
D5_PRNB_SRRM4_NEUROD1_R2 |
| GSM7037165 |
D5_PRNB_SRRM4_ASCL1_R1 |
| GSM7037166 |
D5_PRNB_SRRM4_ASCL1_R2 |
| GSM7037167 |
D8_PRNB_SRRM4_R1 |
| GSM7037168 |
D8_PRNB_SRRM4_R2 |
| GSM7037169 |
D8_PRNB_SRRM4_ASCL1_R1 |
| GSM7037170 |
D8_PRNB_SRRM4_ASCL1_R2 |
| GSM7037171 |
D8_PRNB_SRRM4_NEUROD1_R1 |
| GSM7037172 |
D8_PRNB_SRRM4_NEUROD1_R2 |
| GSM7037173 |
D14_PRNB_SRRM4_R1 |
| GSM7037174 |
D14_PRNB_SRRM4_R2 |
| GSM7037175 |
D14_PRNB_SRRM4_NEUROD1_R1 |
| GSM7037176 |
D14_PRNB_SRRM4_NEUROD1_R2 |
| GSM7037177 |
D14_PRNB_SRRM4_ASCL1_R1 |
| GSM7037178 |
D14_PRNB_SRRM4_ASCL1_R2 |
| GSM7037217 |
PRNB_R1, scRNA-seq |
| GSM7037218 |
PRNB_R2, scRNA-seq |
| GSM7037219 |
PRNBS_R1, scRNA-seq |
| GSM7037220 |
PRNBS_R2, scRNA-seq |
| GSM7037221 |
PRNBSA_R1, scRNA-seq |
| GSM7037222 |
PRNBSA_R2, scRNA-seq |
| GSM7037223 |
PRNBSN_R1, scRNA-seq |
| GSM7037224 |
PRNBSN_R2, scRNA-seq |
| GSM7037225 |
PRNB_R1, scATAC-seq |
| GSM7037226 |
PRNB_R2, scATAC-seq |
| GSM7037227 |
PRNBS_R1, scATAC-seq |
| GSM7037228 |
PRNBS_R2, scATAC-seq |
| GSM7037229 |
PRNBSA_R1, scATAC-seq |
| GSM7037230 |
PRNBSA_R2, scATAC-seq |
| GSM7037231 |
PRNBSN_R1, scATAC-seq |
| GSM7037232 |
PRNBSN_R2, scATAC-seq |
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE225006 |
Defined cellular reprogramming of androgen receptor-active prostate cancer to neuroendocrine prostate cancer [CUTnRUN] |
| GSE225013 |
Defined cellular reprogramming of androgen receptor-active prostate cancer to neuroendocrine prostate cancer [RNA-seq_Sep] |
| GSE225017 |
Defined cellular reprogramming of androgen receptor-active prostate cancer to neuroendocrine prostate cancer [RNA-seq_Nov] |
| GSE225021 |
Defined cellular reprogramming of androgen receptor-active prostate cancer to neuroendocrine prostate cancer [scRNA-seq] |
| GSE225022 |
Defined cellular reprogramming of androgen receptor-active prostate cancer to neuroendocrine prostate cancer [scATAC-seq] |
|
| Relations |
| BioProject |
PRJNA933585 |
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