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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 15, 2024 |
| Title |
Single-cell or nucleus RNAseq of neuroblastoma patient-derived xenografts |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Gene expression profile at single cell level of 17 orthotopic-patient derived xenografts from neuroblastoma samples. All xenografts were obtained through the St. Jude Childhood Solid Tumor Network (https://cstn.stjude.cloud/)
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| Overall design |
15 samples underwent single-nucleus RNA-sequencing, and 2 samples underwent single-cell RNA-sequencing. Fastq files were aligned to a combined human and mouse reference (GRCh38-and-mm10).
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| Contributor(s) |
Patel AG, Dyer MA, Chapple RH, Geeleher P |
| Citation(s) |
38898465 |
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| Submission date |
Apr 04, 2023 |
| Last update date |
Aug 14, 2024 |
| Contact name |
Michael Dyer |
| Organization name |
St. Jude Children's Research Hospital
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| Department |
Developmental Neurobiology
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| Street address |
262 Danny Thomas Pl MS 324
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| City |
Memphis |
| State/province |
TN |
| ZIP/Postal code |
38105 |
| Country |
USA |
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| Platforms (1) |
| GPL25526 |
Illumina NovaSeq 6000 (Homo sapiens; Mus musculus) |
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| Samples (17)
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| GSM7146182 |
SJNBL108_X, single-nucleus |
| GSM7146183 |
SJNBL012407_X1, single-nucleus |
| GSM7146184 |
SJNBL013763_X1, single-nucleus |
| GSM7146185 |
SJNBL015724_X1, single-nucleus |
| GSM7146186 |
SJNBL046145_X1, single-nucleus |
| GSM7146187 |
SJNBL046148_X1, single-nucleus |
| GSM7146188 |
SJNBL047443_X1, single-nucleus |
| GSM7146189 |
SJNBL063820_X1, single-nucleus |
| GSM7146190 |
SJNBL063821_X1, single-nucleus |
| GSM7146191 |
SJNBL030339_X1, single-nucleus |
| GSM7146192 |
SJNBL030513_X1, single-nucleus |
| GSM7146193 |
SJNBL030721_X1, single-nucleus |
| GSM7146194 |
SJNBL030721_X2, single-nucleus |
| GSM7146195 |
SJNBL030721_X3, single-nucleus |
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| Relations |
| BioProject |
PRJNA952244 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE228957_RAW.tar |
792.4 Mb |
(http)(custom) |
TAR (of MTX, TSV) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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