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Series GSE229608 Query DataSets for GSE229608
Status Public on May 05, 2024
Title Multicellular liver organoid model for recapitulating hepatitis C virus infection and non-alcoholic fatty liver disease progression [scRNA-Seq]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Hepatitis C virus (HCV) infection has been successfully managed by anti-viral therapies, however, high prevalence to severe chronic liver disease state including non-alcoholic fatty liver disease (NAFLD) is a problem encountered even after the cure of hepatitis C. Moreover, there is currently no reliable in vitro model capable of investigating host-viral interactions and monitoring the progression of viral hepatitis to chronic liver diseases. Recent organoid technology has been reported for successful infection of HCV, but there is still lack of non-parenchymal cells, which play a crucial role in disease progression. Here, we provided a novel multicellular liver organoid model using co-culture system of macrophages and liver organoids differentiated from the same cell source, human embryonic stem cells. Surprisingly, HCV infection led potent lipid accumulation in liver organoids through regulation of host lipid metabolism, which was further promoted by macrophage co-culture. Lipid enriched condition provided by longterm-treatment with fatty acid accelerated potent HCV amplification and further promotion of inflammation and fibrosis progression. Therefore, our model may be a valuable novel platform recapitulating diverse phenotypes with host-virus intercommunication and inter-cellular interactions and further progressive features of hepatitis C-associated chronic NAFLD progression of patients with HCV.
 
Overall design Liver organoids were cultured without or with macrophages and analyzed using scRNAseq.
 
Contributor(s) Gil D, Lee J, Son MJ, Kim J
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Submission date Apr 13, 2023
Last update date May 06, 2024
Contact name Dayeon Gil
E-mail(s) gilje@korea.kr
Phone +82-43-249-2527
Organization name Korea national institute of health
Department Division of intractable disease research
Street address 202 Osongsaengmyung 2-ro, Heungdeok-gu
City Cheongju-si
State/province Chungcheongbuk-do
ZIP/Postal code 28160
Country South Korea
 
Platforms (1)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (3)
GSM7166275 iMAC,scRNAseq
GSM7166276 LO,scRNAseq
GSM7166277 LOiMAC,scRNAseq
This SubSeries is part of SuperSeries:
GSE229609 Multicellular liver organoid model for recapitulating hepatitis C virus infection and non-alcoholic fatty liver disease progression
Relations
BioProject PRJNA955148

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Supplementary file Size Download File type/resource
GSE229608_RAW.tar 90.2 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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