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Series GSE23515 Query DataSets for GSE23515
Status Public on Mar 16, 2011
Title Radiation responses in peripheral white blood cells of smokers and non-smokers
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Understanding the possible impact of potential confounding factors is necessary for any approach to radiation biodosimetry. Potential confounding factors have not been fully addressed for gene expression-based biodosimetry approaches, such as we are developing. To begin addressing this need, we have used an ex vivo irradiated peripheral blood cell model to investigate the potential effect of smoking on the global radiation gene expression response, and looked for genes that respond to radiation differently in smokers and non-smokers, and also in males and females. The results indicate that only a small number of genes may be significantly confounded by either factor, supporting the idea of developing peripheral blood gene expression strategies for radiation biodosimetry.
 
Overall design Blood from each of 24 different donors was exposed to four doses of ionizing radiation (0, 0.1, 0.5, or 2 Gy) and analyzed using single-color microarray hybridization. The donors represented equal numbers of male and female smokers (1 or more packs a day) and non-smokers. There are 95 data sets in the study as the sample from one of the female smokers exposed to 2 Gy was lost.
 
Contributor(s) Amundson SA, Sunirmal P
Citation(s) 21801107, 37549410
Submission date Aug 09, 2010
Last update date Jan 04, 2024
Contact name Sally Amundson
E-mail(s) saa2108@cumc.columbia.edu
Organization name Columbia University
Department Center for Radiological Research
Street address 630 W. 168th St
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platforms (1)
GPL6480 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Probe Name version)
Samples (95)
GSM575908 Female_Non-smoker_0.1Gy_rep1
GSM575909 Female_Non-smoker_0.5Gy_rep1
GSM575910 Female_Non-smoker_0Gy_rep1
Relations
BioProject PRJNA131087

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE23515_RAW.tar 626.7 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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