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| Status |
Public on May 16, 2024 |
| Title |
Transcriptional characterization of adjuvantly radio(chemo)therapy treated head and neck squamous cell carcinoma (HNSCC). |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We characterized n=134 HNSCC by Quantseq 3´-RNA-sequencing for their transcriptional profiles in order to analyze differential expression of clinically relevant subgroups, define transcriptionally defined molecular subgroups and to characterize the tumor microenvironment by gene expression devonvolution approaches.
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| |
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| Overall design |
n=134 HNSCC with known HPV-status were characterized. The metabolic pathway subtypes were defined.
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| |
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| Contributor(s) |
Unger K, Heß J, Selmansberger M, Danko B, Zitzelsberger H, Belka C |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Jun 20, 2023 |
| Last update date |
May 16, 2024 |
| Contact name |
Kristian Unger |
| E-mail(s) |
kristian.unger@med.uni-muenchen.de, kristian.unger@helmholtz-munich.de
|
| Organization name |
Helmholtz-Zentrum München
|
| Department |
Research Unit of Radiation Cytogenetics
|
| Lab |
Integrative Biology
|
| Street address |
Ingolstädter-Landstr. 1
|
| City |
Neuherberg |
| ZIP/Postal code |
85764 |
| Country |
Germany |
| |
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| Platforms (1) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
|
| Samples (134)
|
|
| Relations |
| BioProject |
PRJNA985582 |
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